miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 42493 0.66 0.58608
Target:  5'- cCCGCGUCGgcgCguuGGGGUCGG-CGGgGc -3'
miRNA:   3'- -GGUGCAGCa--Ggu-CCUCGGCCaGCCgC- -5'
19000 5' -60.3 NC_004684.1 + 57952 0.66 0.58608
Target:  5'- uCCugG-CGUgCCGGGAcGCUGGcaaUCgGGCGg -3'
miRNA:   3'- -GGugCaGCA-GGUCCU-CGGCC---AG-CCGC- -5'
19000 5' -60.3 NC_004684.1 + 31904 0.66 0.575871
Target:  5'- -gACGUUGUUCGcGGucggcauucuGCCGGUCGGgGc -3'
miRNA:   3'- ggUGCAGCAGGU-CCu---------CGGCCAGCCgC- -5'
19000 5' -60.3 NC_004684.1 + 60345 0.66 0.575871
Target:  5'- aCCGCGcguUCGgCCAGcGGuGCCaGGUCGGUc -3'
miRNA:   3'- -GGUGC---AGCaGGUC-CU-CGG-CCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 31327 0.66 0.565703
Target:  5'- gCCAgGaCGUUgAGGAaaucaugguGUCGGUCGGCc -3'
miRNA:   3'- -GGUgCaGCAGgUCCU---------CGGCCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 45884 0.66 0.565703
Target:  5'- gCGCGcCGUCCAc--GCUGG-CGGCGa -3'
miRNA:   3'- gGUGCaGCAGGUccuCGGCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 67480 0.66 0.565703
Target:  5'- -gGCGguauuuUCGUCguGGAGCCGGacacCGGgGg -3'
miRNA:   3'- ggUGC------AGCAGguCCUCGGCCa---GCCgC- -5'
19000 5' -60.3 NC_004684.1 + 18431 0.66 0.565703
Target:  5'- gCCGCcgGUCGgcUCCGGGGGC-GGcacCGGCGu -3'
miRNA:   3'- -GGUG--CAGC--AGGUCCUCGgCCa--GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 42574 0.66 0.565703
Target:  5'- gCCugGUCGUUggaCAGGAuGCCGaa-GGUGg -3'
miRNA:   3'- -GGugCAGCAG---GUCCU-CGGCcagCCGC- -5'
19000 5' -60.3 NC_004684.1 + 8939 0.66 0.555583
Target:  5'- -gGCGacaCGUCCAGGcccauGGCCaGUCgGGCGa -3'
miRNA:   3'- ggUGCa--GCAGGUCC-----UCGGcCAG-CCGC- -5'
19000 5' -60.3 NC_004684.1 + 20256 0.66 0.555583
Target:  5'- gCGCGUCGaacgCCGcaaGGGCCGGgccgucacCGGCGa -3'
miRNA:   3'- gGUGCAGCa---GGUc--CUCGGCCa-------GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 11684 0.66 0.555583
Target:  5'- gC-CGUCGUCCAGGcGCac--CGGCGg -3'
miRNA:   3'- gGuGCAGCAGGUCCuCGgccaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 3638 0.66 0.555583
Target:  5'- gCGCGcCacCUGGGucauGCCGGUCGGCa -3'
miRNA:   3'- gGUGCaGcaGGUCCu---CGGCCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 14090 0.66 0.555583
Target:  5'- gCCACugcaccgUGUCCAGGuGGCCGGgcuGGCc -3'
miRNA:   3'- -GGUGca-----GCAGGUCC-UCGGCCag-CCGc -5'
19000 5' -60.3 NC_004684.1 + 31028 0.66 0.552556
Target:  5'- uCCAgGUCGucgggcaggUCCAagguccacgccugcGGcauGCCGGUCGGUGu -3'
miRNA:   3'- -GGUgCAGC---------AGGU--------------CCu--CGGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 59434 0.66 0.545515
Target:  5'- gCCugG-CGgccuugcccaCCGGuGugcGCCGGUCGGCGg -3'
miRNA:   3'- -GGugCaGCa---------GGUC-Cu--CGGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 8208 0.66 0.545515
Target:  5'- aCGCgGUCGUCCucGucaaugcuGCCGGUgGGCa -3'
miRNA:   3'- gGUG-CAGCAGGucCu-------CGGCCAgCCGc -5'
19000 5' -60.3 NC_004684.1 + 42977 0.66 0.545515
Target:  5'- -gGCGgucUCGgugCCAGaGGCCGGgcgugCGGCGg -3'
miRNA:   3'- ggUGC---AGCa--GGUCcUCGGCCa----GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 55848 0.66 0.535507
Target:  5'- cUCAuuCGUCGUCCucuGcGGGCCGGUgcaaCGGgGa -3'
miRNA:   3'- -GGU--GCAGCAGGu--C-CUCGGCCA----GCCgC- -5'
19000 5' -60.3 NC_004684.1 + 2294 0.66 0.535507
Target:  5'- aCCAUGUUGUCCucGGcguaguGGCCGuG-CGGCa -3'
miRNA:   3'- -GGUGCAGCAGGu-CC------UCGGC-CaGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.