miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 15805 0.69 0.394891
Target:  5'- gCugGUCGgugucUCCGGGAgcacgauGCCGGU-GGCGu -3'
miRNA:   3'- gGugCAGC-----AGGUCCU-------CGGCCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 2375 0.69 0.404329
Target:  5'- aCCGCGUCGUggcCCA--GGCUGG-CGGCa -3'
miRNA:   3'- -GGUGCAGCA---GGUccUCGGCCaGCCGc -5'
19000 5' -60.3 NC_004684.1 + 58819 0.69 0.404329
Target:  5'- gCCGCcUCGgaugUCCGGGAuGaugCGGUCGGCGc -3'
miRNA:   3'- -GGUGcAGC----AGGUCCU-Cg--GCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 44807 0.68 0.421847
Target:  5'- -uGCGUCGuaguuguagUCCGGGugggcgagcAGCgGGUUGGCGg -3'
miRNA:   3'- ggUGCAGC---------AGGUCC---------UCGgCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 66022 0.68 0.430775
Target:  5'- aCCugGUCGagaCCGGGccggacguGcCCGGUgCGGCGg -3'
miRNA:   3'- -GGugCAGCa--GGUCCu-------C-GGCCA-GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 11532 0.68 0.437091
Target:  5'- gCGCGUCGgcccggucagcUCCGGGuuggcgaagugggcGGCCGGguagguggUCGGCGu -3'
miRNA:   3'- gGUGCAGC-----------AGGUCC--------------UCGGCC--------AGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 50590 0.68 0.439814
Target:  5'- cCUAUGcCGUCgGGucGgCGGUCGGCGg -3'
miRNA:   3'- -GGUGCaGCAGgUCcuCgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 15386 0.68 0.439814
Target:  5'- aCCGCGUCGcgCCAGccaaacgucGGGCUGGU-GGCc -3'
miRNA:   3'- -GGUGCAGCa-GGUC---------CUCGGCCAgCCGc -5'
19000 5' -60.3 NC_004684.1 + 30153 0.68 0.448959
Target:  5'- gCGCGUCGgCCAGuGGGCgaucaacgccguCGG-CGGCGa -3'
miRNA:   3'- gGUGCAGCaGGUC-CUCG------------GCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 12919 0.68 0.452647
Target:  5'- aCCACGUCGgcagcagagccgccgUCCucGGGCgCGucGUCGGCGg -3'
miRNA:   3'- -GGUGCAGC---------------AGGucCUCG-GC--CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 58205 0.68 0.458209
Target:  5'- gUCGCGUUGUUCGcGGAcCCGGccaugcUCGGCGc -3'
miRNA:   3'- -GGUGCAGCAGGU-CCUcGGCC------AGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29002 0.67 0.467559
Target:  5'- aCACGUCGUCCGGucgaucAGCggCGGUcgccaCGGCGc -3'
miRNA:   3'- gGUGCAGCAGGUCc-----UCG--GCCA-----GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 21991 0.67 0.467559
Target:  5'- cCCGCG-CgGUCCAGGAgGCCauggGGcCGGUGc -3'
miRNA:   3'- -GGUGCaG-CAGGUCCU-CGG----CCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29755 0.67 0.477007
Target:  5'- gUCugGUCGgccgcgCgCAGGAGCaCGucGUUGGCGg -3'
miRNA:   3'- -GGugCAGCa-----G-GUCCUCG-GC--CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 48954 0.67 0.486548
Target:  5'- gCACGUCGgcgggCgGGGuGGCCGGggcgGGCGc -3'
miRNA:   3'- gGUGCAGCa----GgUCC-UCGGCCag--CCGC- -5'
19000 5' -60.3 NC_004684.1 + 17641 0.67 0.486548
Target:  5'- gCACcUCGUCCAGGcGGuCCuGGUaGGCGa -3'
miRNA:   3'- gGUGcAGCAGGUCC-UC-GG-CCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 63242 0.67 0.496179
Target:  5'- aCCugGUUcggaGUCU--GAGCCGGUgccCGGCGg -3'
miRNA:   3'- -GGugCAG----CAGGucCUCGGCCA---GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 57399 0.67 0.50492
Target:  5'- gCCA-GUCGaCCGGGcagggcuGGCCGGggugCGGCu -3'
miRNA:   3'- -GGUgCAGCaGGUCC-------UCGGCCa---GCCGc -5'
19000 5' -60.3 NC_004684.1 + 848 0.67 0.50492
Target:  5'- uCgGCGgUGUCCAGGAgcGCCGccagggcGUCGGUGu -3'
miRNA:   3'- -GgUGCaGCAGGUCCU--CGGC-------CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 51783 0.67 0.505895
Target:  5'- cUCGCGguacUCGUCCAGGuAGucCCGGUCcacGGCc -3'
miRNA:   3'- -GGUGC----AGCAGGUCC-UC--GGCCAG---CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.