miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 3' -59.6 NC_004684.1 + 63596 0.66 0.55989
Target:  5'- aCgCCAGGccgccCUGCuGGCGCA---GGCGCa -3'
miRNA:   3'- -GgGGUCCu----GACG-CCGCGUaugCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 64987 0.66 0.55989
Target:  5'- aCgCGGGuCUGCGGCucGCcaGCGGCGu -3'
miRNA:   3'- gGgGUCCuGACGCCG--CGuaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 39443 0.66 0.55989
Target:  5'- gCCCCAGGcCga-GGCGU--GCGGCuACc -3'
miRNA:   3'- -GGGGUCCuGacgCCGCGuaUGCCG-UG- -5'
19002 3' -59.6 NC_004684.1 + 49550 0.66 0.55989
Target:  5'- aCCCCGGcgaaccguucGACUcGUGGauCGCGgcaACGGCACc -3'
miRNA:   3'- -GGGGUC----------CUGA-CGCC--GCGUa--UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 18344 0.66 0.556781
Target:  5'- cCCCCGGagccGACcgGCGGCGCgGUGCcgcucgacaucaccGGCAa -3'
miRNA:   3'- -GGGGUC----CUGa-CGCCGCG-UAUG--------------CCGUg -5'
19002 3' -59.6 NC_004684.1 + 53291 0.66 0.555746
Target:  5'- aCCCuGGACgcauuccuggccaGCGGCGCGguCGGCc- -3'
miRNA:   3'- gGGGuCCUGa------------CGCCGCGUauGCCGug -5'
19002 3' -59.6 NC_004684.1 + 1386 0.66 0.549548
Target:  5'- gCUCCGGGugggGCGGCGgCuacCGGUACg -3'
miRNA:   3'- -GGGGUCCuga-CGCCGC-GuauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 48974 0.66 0.549548
Target:  5'- -gCCGGGGCg--GGCGCGU-CGGUGCc -3'
miRNA:   3'- ggGGUCCUGacgCCGCGUAuGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 30282 0.66 0.549548
Target:  5'- gCCagAGGACcugaGCGGCGCuauCGGCuACg -3'
miRNA:   3'- -GGggUCCUGa---CGCCGCGuauGCCG-UG- -5'
19002 3' -59.6 NC_004684.1 + 48712 0.66 0.549548
Target:  5'- gCCUGGGAaga-GGCGC--ACGGCACc -3'
miRNA:   3'- gGGGUCCUgacgCCGCGuaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 65899 0.66 0.549548
Target:  5'- cCUCCGGGucacCUGCccGGUGC--ACGGCAUc -3'
miRNA:   3'- -GGGGUCCu---GACG--CCGCGuaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 22340 0.66 0.539266
Target:  5'- aCCCGGuacaGGCggugGCGGCGgCGgcgGCGGuCGCg -3'
miRNA:   3'- gGGGUC----CUGa---CGCCGC-GUa--UGCC-GUG- -5'
19002 3' -59.6 NC_004684.1 + 15817 0.66 0.539266
Target:  5'- gCCgAGcGACccgGUGGCGC--GCGGCAUc -3'
miRNA:   3'- gGGgUC-CUGa--CGCCGCGuaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 58964 0.66 0.539266
Target:  5'- -gCUGGGAUUGUGGCGUgcuGUGCGGg-- -3'
miRNA:   3'- ggGGUCCUGACGCCGCG---UAUGCCgug -5'
19002 3' -59.6 NC_004684.1 + 51447 0.66 0.539266
Target:  5'- aCCUCGguGGACUG-GGCGCAgaucgagcCGGuCACg -3'
miRNA:   3'- -GGGGU--CCUGACgCCGCGUau------GCC-GUG- -5'
19002 3' -59.6 NC_004684.1 + 26438 0.66 0.52905
Target:  5'- gCCgCCGGuGGCc-CGGUGUAcgGCGGCACg -3'
miRNA:   3'- -GG-GGUC-CUGacGCCGCGUa-UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 26983 0.66 0.52905
Target:  5'- aUCCAGGccGgUGCGaGCGCGgcgGGCGCg -3'
miRNA:   3'- gGGGUCC--UgACGC-CGCGUaugCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 7565 0.66 0.528033
Target:  5'- gCCCCGGGuggcgcuGgUGCGGCugGUGcGCGGCAa -3'
miRNA:   3'- -GGGGUCC-------UgACGCCG--CGUaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 29227 0.66 0.524984
Target:  5'- -gCCAGGacauGCUGUGGCGCGgccccauucaaGGCAUc -3'
miRNA:   3'- ggGGUCC----UGACGCCGCGUaug--------CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 16475 0.66 0.518907
Target:  5'- aCCUguGGGCagGCGGUGUuguuUACaGCACc -3'
miRNA:   3'- -GGGguCCUGa-CGCCGCGu---AUGcCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.