miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19003 5' -52.6 NC_004684.1 + 20438 0.66 0.884898
Target:  5'- cUGCGCggu-GACggUGCACCgggcgACGCCGa -3'
miRNA:   3'- -ACGCGaacuUUGagACGUGG-----UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 10384 0.66 0.884898
Target:  5'- gGUGCggGcGAcCUCUgGCGCgACACCGg -3'
miRNA:   3'- aCGCGaaCuUU-GAGA-CGUGgUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 42734 0.66 0.884898
Target:  5'- cGCGCUcaucGCUggcgGCACCAgCACCGg -3'
miRNA:   3'- aCGCGAacuuUGAga--CGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 1261 0.66 0.884898
Target:  5'- aGCGCcUGcgGCUCgGCACCaaaguGCACgGu -3'
miRNA:   3'- aCGCGaACuuUGAGaCGUGG-----UGUGgC- -5'
19003 5' -52.6 NC_004684.1 + 56737 0.66 0.87722
Target:  5'- cGCGCcagcacgGGAAC-CgGCACCAgACCa -3'
miRNA:   3'- aCGCGaa-----CUUUGaGaCGUGGUgUGGc -5'
19003 5' -52.6 NC_004684.1 + 348 0.66 0.87722
Target:  5'- gUGCGCaggcugUUGGcgaucAGCUCgGUguuACCGCGCCGg -3'
miRNA:   3'- -ACGCG------AACU-----UUGAGaCG---UGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 33664 0.66 0.87722
Target:  5'- cGgGCaUGGcgucGCUgUGCACCAcCACCGc -3'
miRNA:   3'- aCgCGaACUu---UGAgACGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 30471 0.66 0.869282
Target:  5'- aUGCGCgUGggG-UC--CACCACGCCGu -3'
miRNA:   3'- -ACGCGaACuuUgAGacGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 64259 0.66 0.869282
Target:  5'- gUGCGCcUGGAAgaggUGCGCCGCAUCc -3'
miRNA:   3'- -ACGCGaACUUUgag-ACGUGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 18478 0.66 0.869282
Target:  5'- gGUGCUgucGGugUCcgGCACCGcCACCGc -3'
miRNA:   3'- aCGCGAac-UUugAGa-CGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 36106 0.66 0.869282
Target:  5'- cGCGCggUGGGugcGC-CUGCuggccuucGCCACACCu -3'
miRNA:   3'- aCGCGa-ACUU---UGaGACG--------UGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 8254 0.66 0.866851
Target:  5'- cGCGCccccggcgaucuggUUGAcgauCUgCUGCACCcgaGCACCGa -3'
miRNA:   3'- aCGCG--------------AACUuu--GA-GACGUGG---UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 27306 0.66 0.852654
Target:  5'- aGCgGCccgaUGAGaagGCUCUGgAUCGCACCGc -3'
miRNA:   3'- aCG-CGa---ACUU---UGAGACgUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 59264 0.66 0.852654
Target:  5'- aGCGCUaccuGCUCaccuucgcagGCACCAgCGCCGa -3'
miRNA:   3'- aCGCGAacuuUGAGa---------CGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 32287 0.66 0.851797
Target:  5'- gGUGCaUUGgcGCUCgGCGCUgugccugACGCCGg -3'
miRNA:   3'- aCGCG-AACuuUGAGaCGUGG-------UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 47319 0.67 0.847478
Target:  5'- cGCGCccGAGGCggugcgCUGaugcauaccuaccacCGCCGCACCGu -3'
miRNA:   3'- aCGCGaaCUUUGa-----GAC---------------GUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 41043 0.67 0.84398
Target:  5'- cGCGC-UGGAACg--GCAgCCGCAgCGg -3'
miRNA:   3'- aCGCGaACUUUGagaCGU-GGUGUgGC- -5'
19003 5' -52.6 NC_004684.1 + 25262 0.67 0.835078
Target:  5'- gGCGCUggaGAAGCUgcGCACCAaggGCCu -3'
miRNA:   3'- aCGCGAa--CUUUGAgaCGUGGUg--UGGc -5'
19003 5' -52.6 NC_004684.1 + 9763 0.67 0.835078
Target:  5'- cGCGUUcGAGGC-CUGCGuggaagaccuCUACGCCGa -3'
miRNA:   3'- aCGCGAaCUUUGaGACGU----------GGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 58339 0.67 0.834175
Target:  5'- cGCGCccgGugGCcCUGCuggcguuGCCGCGCCGg -3'
miRNA:   3'- aCGCGaa-CuuUGaGACG-------UGGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.