miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 16132 0.66 0.709186
Target:  5'- gGCCACgauGUCGUcGUCGCCGggcacgucaaCGACCa- -3'
miRNA:   3'- -CGGUG---CGGCAuCAGCGGUa---------GCUGGag -5'
19004 3' -57 NC_004684.1 + 50191 0.66 0.709186
Target:  5'- gGCCGCa-CGacGUUGCCGUCGGCgUCg -3'
miRNA:   3'- -CGGUGcgGCauCAGCGGUAGCUGgAG- -5'
19004 3' -57 NC_004684.1 + 57895 0.66 0.709186
Target:  5'- aCCAgGCCGUGGUCGgguucCCAggucUUGGCC-Ca -3'
miRNA:   3'- cGGUgCGGCAUCAGC-----GGU----AGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 25828 0.66 0.709186
Target:  5'- aUCGCGCCGUAcaCaCCGUUGACCg- -3'
miRNA:   3'- cGGUGCGGCAUcaGcGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 33636 0.66 0.709186
Target:  5'- cGCCGCGCCucaacAGgacggUGCCGUaCGACCcCg -3'
miRNA:   3'- -CGGUGCGGca---UCa----GCGGUA-GCUGGaG- -5'
19004 3' -57 NC_004684.1 + 12890 0.66 0.709186
Target:  5'- gGgCGCGUCGUcggcGGgggUGCCGUUGuCCUCg -3'
miRNA:   3'- -CgGUGCGGCA----UCa--GCGGUAGCuGGAG- -5'
19004 3' -57 NC_004684.1 + 23549 0.66 0.708142
Target:  5'- cGUCACGCUGUcgggcauGGagGCCAgcagaUCGGCCa- -3'
miRNA:   3'- -CGGUGCGGCA-------UCagCGGU-----AGCUGGag -5'
19004 3' -57 NC_004684.1 + 61805 0.66 0.705009
Target:  5'- gGCCcCGUCGgcaggcgGGUCGCCuugcaggcgguuuUCGuCCUCg -3'
miRNA:   3'- -CGGuGCGGCa------UCAGCGGu------------AGCuGGAG- -5'
19004 3' -57 NC_004684.1 + 18217 0.66 0.703964
Target:  5'- gGCCAUGCCGcacuggggcaagGGUccguacaacguggcCGCCAUCGACg-- -3'
miRNA:   3'- -CGGUGCGGCa-----------UCA--------------GCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 63473 0.66 0.698725
Target:  5'- cGCUACGCCGccaucGGcUgGCgCGUCGGCCg- -3'
miRNA:   3'- -CGGUGCGGCa----UC-AgCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 44681 0.66 0.698725
Target:  5'- cGCgAUGCCGauGUCGCUggcGUCGACUg- -3'
miRNA:   3'- -CGgUGCGGCauCAGCGG---UAGCUGGag -5'
19004 3' -57 NC_004684.1 + 40337 0.66 0.698725
Target:  5'- nCgGCGCUGggcaGGUCGCUGgcggCGGCCUUg -3'
miRNA:   3'- cGgUGCGGCa---UCAGCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 60920 0.66 0.688203
Target:  5'- gGCCACGgCGUcgcaCGCC-UCGGCCa- -3'
miRNA:   3'- -CGGUGCgGCAuca-GCGGuAGCUGGag -5'
19004 3' -57 NC_004684.1 + 61168 0.66 0.688203
Target:  5'- aGCCAC-CCGgccaGGUCGgCGggguuggUGGCCUCg -3'
miRNA:   3'- -CGGUGcGGCa---UCAGCgGUa------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 17155 0.66 0.688203
Target:  5'- --gGCaCCGUcGUCGCCGUCGAgCUg -3'
miRNA:   3'- cggUGcGGCAuCAGCGGUAGCUgGAg -5'
19004 3' -57 NC_004684.1 + 35132 0.66 0.688203
Target:  5'- aGCCA-GCuCGgcucUGCCAUCGACCUg -3'
miRNA:   3'- -CGGUgCG-GCaucaGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 65069 0.66 0.688203
Target:  5'- aGCCGCagacCCGc-GUCGCgguCAUCGACCUg -3'
miRNA:   3'- -CGGUGc---GGCauCAGCG---GUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 65404 0.66 0.688203
Target:  5'- gGCgCugGCCGUGGUgcacagcgaggcCGCCGUCGcguUCUg -3'
miRNA:   3'- -CG-GugCGGCAUCA------------GCGGUAGCu--GGAg -5'
19004 3' -57 NC_004684.1 + 14497 0.66 0.677631
Target:  5'- aCCACGCCG--GUCGCCggUGGCa-- -3'
miRNA:   3'- cGGUGCGGCauCAGCGGuaGCUGgag -5'
19004 3' -57 NC_004684.1 + 37646 0.66 0.677631
Target:  5'- gGCCAUgGCCGcccGGUCaGgCAUCGACC-Cg -3'
miRNA:   3'- -CGGUG-CGGCa--UCAG-CgGUAGCUGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.