miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 3' -61 NC_004684.1 + 59841 0.66 0.478586
Target:  5'- cACCCGGGGccgguCCAGC-ACC-GCGuCGAa -3'
miRNA:   3'- uUGGGCCUCu----GGUCGcUGGaCGC-GCU- -5'
19006 3' -61 NC_004684.1 + 15720 0.66 0.478586
Target:  5'- -uCCCGGAgacaccGACCAGCaagGGCCUcGUGCa- -3'
miRNA:   3'- uuGGGCCU------CUGGUCG---CUGGA-CGCGcu -5'
19006 3' -61 NC_004684.1 + 26818 0.66 0.472775
Target:  5'- cGACCCGGAGAUCAcCGAgggcuucgcccagcuCCUGgagguCGCGGa -3'
miRNA:   3'- -UUGGGCCUCUGGUcGCU---------------GGAC-----GCGCU- -5'
19006 3' -61 NC_004684.1 + 62985 0.66 0.468922
Target:  5'- -uUCCGGcGGCCAG-GACUugcugGCGCGAu -3'
miRNA:   3'- uuGGGCCuCUGGUCgCUGGa----CGCGCU- -5'
19006 3' -61 NC_004684.1 + 63903 0.66 0.468922
Target:  5'- -uCCUGGcGGCCAcgguGCGGCCcgGCGUGGc -3'
miRNA:   3'- uuGGGCCuCUGGU----CGCUGGa-CGCGCU- -5'
19006 3' -61 NC_004684.1 + 44180 0.66 0.468922
Target:  5'- gAACCCGGcGcgcGCCAGC-ACCU-CGCGGu -3'
miRNA:   3'- -UUGGGCCuC---UGGUCGcUGGAcGCGCU- -5'
19006 3' -61 NC_004684.1 + 18418 0.66 0.468922
Target:  5'- cGGCCCGGcGGgcgcACCGGCGGCC-GaCGUGGc -3'
miRNA:   3'- -UUGGGCC-UC----UGGUCGCUGGaC-GCGCU- -5'
19006 3' -61 NC_004684.1 + 66880 0.66 0.468922
Target:  5'- cAGCgCCGGuggcGACCuucggcGCGGCCUucgGCGCGGc -3'
miRNA:   3'- -UUG-GGCCu---CUGGu-----CGCUGGA---CGCGCU- -5'
19006 3' -61 NC_004684.1 + 66605 0.66 0.468922
Target:  5'- cGACCUGGuucuuGGCCAGCuugguGCCUGCGg-- -3'
miRNA:   3'- -UUGGGCCu----CUGGUCGc----UGGACGCgcu -5'
19006 3' -61 NC_004684.1 + 5063 0.66 0.466041
Target:  5'- uGugCUGGAGGCCuccGGCGaugagaucgcggagGCCcGCGCGGc -3'
miRNA:   3'- -UugGGCCUCUGG---UCGC--------------UGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 59483 0.66 0.460309
Target:  5'- cACCUGcGcGGCCAGCGGCCccaacggagcaccggGCGCGu -3'
miRNA:   3'- uUGGGC-CuCUGGUCGCUGGa--------------CGCGCu -5'
19006 3' -61 NC_004684.1 + 67231 0.66 0.459357
Target:  5'- cAACCCGGucACCGGUucGACCgGCGUu- -3'
miRNA:   3'- -UUGGGCCucUGGUCG--CUGGaCGCGcu -5'
19006 3' -61 NC_004684.1 + 1462 0.66 0.458407
Target:  5'- gGACCUcaacggucgGGAGACCuacgcgccggaGGUGGCCcgccuguUGCGCGAc -3'
miRNA:   3'- -UUGGG---------CCUCUGG-----------UCGCUGG-------ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 5466 0.66 0.458407
Target:  5'- uGCCgGGAcacuGACCGGCGACggaacgaUUGCGCu- -3'
miRNA:   3'- uUGGgCCU----CUGGUCGCUG-------GACGCGcu -5'
19006 3' -61 NC_004684.1 + 19465 0.66 0.449898
Target:  5'- aGGCCUGGAagcagaagguGGCCGaggccgccgaccGUGGCCUGCGCu- -3'
miRNA:   3'- -UUGGGCCU----------CUGGU------------CGCUGGACGCGcu -5'
19006 3' -61 NC_004684.1 + 63276 0.66 0.448958
Target:  5'- gGACCUGGAGccGCCgGGCGuaucCCUgcaccacGCGCGAg -3'
miRNA:   3'- -UUGGGCCUC--UGG-UCGCu---GGA-------CGCGCU- -5'
19006 3' -61 NC_004684.1 + 2679 0.66 0.448958
Target:  5'- gGACCCgauGGAGGCCcuGGCGGCCgccaacaUGCuCGAc -3'
miRNA:   3'- -UUGGG---CCUCUGG--UCGCUGG-------ACGcGCU- -5'
19006 3' -61 NC_004684.1 + 36277 0.66 0.440547
Target:  5'- cGCCaaGGuccuCCAGCG-CCUGCGCGGc -3'
miRNA:   3'- uUGGg-CCucu-GGUCGCuGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 28819 0.66 0.431307
Target:  5'- gAugUUGGGGuCCGGCGACUcgauUGCgGCGAa -3'
miRNA:   3'- -UugGGCCUCuGGUCGCUGG----ACG-CGCU- -5'
19006 3' -61 NC_004684.1 + 1483 0.66 0.431307
Target:  5'- uGCCCGGugcggcGGCCcuGGUGgccaACCUGCGCGc -3'
miRNA:   3'- uUGGGCCu-----CUGG--UCGC----UGGACGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.