miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19007 3' -65.8 NC_004684.1 + 5692 0.66 0.314038
Target:  5'- gGGGcCCGGCCUGC-CCaCgGCaCCGAc -3'
miRNA:   3'- gCCC-GGCUGGACGcGGcGgCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 6541 0.66 0.314038
Target:  5'- -cGGCCGACau-CGCCGCCGUggacaUCGAc -3'
miRNA:   3'- gcCCGGCUGgacGCGGCGGCGa----GGCU- -5'
19007 3' -65.8 NC_004684.1 + 8725 0.66 0.314038
Target:  5'- gCGGcGCUGAUCccgaUGUucGCCGCCGCgcCCGGc -3'
miRNA:   3'- -GCC-CGGCUGG----ACG--CGGCGGCGa-GGCU- -5'
19007 3' -65.8 NC_004684.1 + 62513 0.66 0.312624
Target:  5'- -aGGCCG-CCUGaGCCGCCuucaauggaccaCUCCGAg -3'
miRNA:   3'- gcCCGGCuGGACgCGGCGGc-----------GAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 6469 0.66 0.307014
Target:  5'- -uGGCCGagGCgUGCGaCGCCGUggCCGAg -3'
miRNA:   3'- gcCCGGC--UGgACGCgGCGGCGa-GGCU- -5'
19007 3' -65.8 NC_004684.1 + 53916 0.66 0.302858
Target:  5'- gGGGUugccguugccguccuCGGCCUccaGCUGCUGCUCCGu -3'
miRNA:   3'- gCCCG---------------GCUGGAcg-CGGCGGCGAGGCu -5'
19007 3' -65.8 NC_004684.1 + 717 0.66 0.300796
Target:  5'- uGGGaaGACCUGgGCaccgccggugaccggGCCGCcgCCGAg -3'
miRNA:   3'- gCCCggCUGGACgCGg--------------CGGCGa-GGCU- -5'
19007 3' -65.8 NC_004684.1 + 10183 0.66 0.300111
Target:  5'- -aGGCUGAgcaCCaucGCGCCGCCGCcuUCCa- -3'
miRNA:   3'- gcCCGGCU---GGa--CGCGGCGGCG--AGGcu -5'
19007 3' -65.8 NC_004684.1 + 25733 0.66 0.300111
Target:  5'- uCGGcCCGGCCUuCGUaCGCCGCaCCGGa -3'
miRNA:   3'- -GCCcGGCUGGAcGCG-GCGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 9577 0.66 0.300111
Target:  5'- aCGuGGCCGACCUGauCCGUgGCUgggacagcaugcUCGAg -3'
miRNA:   3'- -GC-CCGGCUGGACgcGGCGgCGA------------GGCU- -5'
19007 3' -65.8 NC_004684.1 + 7723 0.66 0.299427
Target:  5'- -uGGCCGugagccACCUgaucgguaucgccGCGCCGCUGUcgUCCGAc -3'
miRNA:   3'- gcCCGGC------UGGA-------------CGCGGCGGCG--AGGCU- -5'
19007 3' -65.8 NC_004684.1 + 10498 0.66 0.293329
Target:  5'- -cGGCCGACgcaCUGgGCCGCCGa--CGGu -3'
miRNA:   3'- gcCCGGCUG---GACgCGGCGGCgagGCU- -5'
19007 3' -65.8 NC_004684.1 + 56236 0.66 0.293329
Target:  5'- gGcGGUCaGCCUGCGCaaCGCCGggaugaccuuCUCCGAg -3'
miRNA:   3'- gC-CCGGcUGGACGCG--GCGGC----------GAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 55405 0.66 0.293329
Target:  5'- gGGGUCauGCCgucgGUGCCGCCGgUCgCGGu -3'
miRNA:   3'- gCCCGGc-UGGa---CGCGGCGGCgAG-GCU- -5'
19007 3' -65.8 NC_004684.1 + 60660 0.66 0.286667
Target:  5'- cCGGGCCaGCCagGUGUCGCCuuuCUUCGGc -3'
miRNA:   3'- -GCCCGGcUGGa-CGCGGCGGc--GAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 20218 0.66 0.286667
Target:  5'- aGcGGCgGcCCUG-GCCGCCGCUaCGGu -3'
miRNA:   3'- gC-CCGgCuGGACgCGGCGGCGAgGCU- -5'
19007 3' -65.8 NC_004684.1 + 482 0.66 0.286667
Target:  5'- uGuGGCCGccaagGCC-GCGCCgaagGCCGCgCCGAa -3'
miRNA:   3'- gC-CCGGC-----UGGaCGCGG----CGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 64958 0.66 0.280124
Target:  5'- gCGGGCgauguCGGCCU-UGUCGCCGgUCUGGa -3'
miRNA:   3'- -GCCCG-----GCUGGAcGCGGCGGCgAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 25013 0.66 0.280124
Target:  5'- gGGGCCGAuugucUCUGCcaucaguuGCUGCCuuUCCGGu -3'
miRNA:   3'- gCCCGGCU-----GGACG--------CGGCGGcgAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 11210 0.66 0.280124
Target:  5'- cCGGGCgcuCGAUa-GCGCCGCCGUcgucgCCGu -3'
miRNA:   3'- -GCCCG---GCUGgaCGCGGCGGCGa----GGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.