miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 3' -57.6 NC_004684.1 + 37833 0.66 0.671268
Target:  5'- aCACAGCGgucaucucgcugagCGUGAUGGCCgcgCACCa-- -3'
miRNA:   3'- -GUGUCGCg-------------GCAUUGCCGGa--GUGGcuc -5'
19011 3' -57.6 NC_004684.1 + 66849 0.66 0.667018
Target:  5'- -cCGGUGCCcuccaGGCCuUCGCCGGGu -3'
miRNA:   3'- guGUCGCGGcauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 62163 0.66 0.667018
Target:  5'- gGCcGCGCgCGgacaccAUGGCCUCACCugGAGc -3'
miRNA:   3'- gUGuCGCG-GCau----UGCCGGAGUGG--CUC- -5'
19011 3' -57.6 NC_004684.1 + 53636 0.66 0.667018
Target:  5'- uGgAGCGCCa----GGCCguugagCACCGAGg -3'
miRNA:   3'- gUgUCGCGGcauugCCGGa-----GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 63278 0.66 0.667018
Target:  5'- gUACAGgcuugGCCaGU--UGGCCUCACCGAu -3'
miRNA:   3'- -GUGUCg----CGG-CAuuGCCGGAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 62302 0.66 0.667018
Target:  5'- -cCAGCGCCGc-GCgGGCCUCcgcgaucucaucGCCGGa -3'
miRNA:   3'- guGUCGCGGCauUG-CCGGAG------------UGGCUc -5'
19011 3' -57.6 NC_004684.1 + 34029 0.66 0.667018
Target:  5'- aACGGCGggaaaCCGaUGGCgaGGCCggacugCACCGAGg -3'
miRNA:   3'- gUGUCGC-----GGC-AUUG--CCGGa-----GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 67008 0.66 0.667018
Target:  5'- aCGCGGgGCCGU--CGGUCUCGgCCa-- -3'
miRNA:   3'- -GUGUCgCGGCAuuGCCGGAGU-GGcuc -5'
19011 3' -57.6 NC_004684.1 + 64442 0.66 0.656375
Target:  5'- aGCAGCGCgccGAUGGCCUCggugcucggcACCGGa -3'
miRNA:   3'- gUGUCGCGgcaUUGCCGGAG----------UGGCUc -5'
19011 3' -57.6 NC_004684.1 + 6782 0.66 0.656375
Target:  5'- gACGuGCGCCGggUGAcCGGCCUgcgCACCGuGc -3'
miRNA:   3'- gUGU-CGCGGC--AUU-GCCGGA---GUGGCuC- -5'
19011 3' -57.6 NC_004684.1 + 45617 0.66 0.656375
Target:  5'- -cCAGCG-CGU--CGGUCUUGCCGGGg -3'
miRNA:   3'- guGUCGCgGCAuuGCCGGAGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 746 0.66 0.656375
Target:  5'- aCACcGaCGCCcUGGCGGCgCUCcuggacaccGCCGAGg -3'
miRNA:   3'- -GUGuC-GCGGcAUUGCCG-GAG---------UGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 58409 0.66 0.656375
Target:  5'- gCGCAGCaccugguUCGUGAUGGCCUCGCa--- -3'
miRNA:   3'- -GUGUCGc------GGCAUUGCCGGAGUGgcuc -5'
19011 3' -57.6 NC_004684.1 + 18061 0.66 0.656375
Target:  5'- -uCAGCGCCGaccAUGGCC--GCCGAc -3'
miRNA:   3'- guGUCGCGGCau-UGCCGGagUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 64878 0.66 0.656375
Target:  5'- cCGCAGUGCCG----GGCgUCGuuGAGg -3'
miRNA:   3'- -GUGUCGCGGCauugCCGgAGUggCUC- -5'
19011 3' -57.6 NC_004684.1 + 12867 0.66 0.649978
Target:  5'- uCACGGCGCuCGUAcccccgccggugagcGCGGUacgagCUUACCGGc -3'
miRNA:   3'- -GUGUCGCG-GCAU---------------UGCCG-----GAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 28088 0.66 0.645711
Target:  5'- uGgGGCGCuCGUuaGGCGaGCUgCACCGAGu -3'
miRNA:   3'- gUgUCGCG-GCA--UUGC-CGGaGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 27068 0.66 0.645711
Target:  5'- -cCAGCGCCGagguCGuGCCU-GCCGGGc -3'
miRNA:   3'- guGUCGCGGCauu-GC-CGGAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 58256 0.66 0.645711
Target:  5'- uGCcGCGCCGaGGCGGUCgaacggUACCGGu -3'
miRNA:   3'- gUGuCGCGGCaUUGCCGGa-----GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 52707 0.66 0.645711
Target:  5'- ---cGCGCCcgu-CGGCCUCGCCa-- -3'
miRNA:   3'- guguCGCGGcauuGCCGGAGUGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.