miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19012 5' -57.9 NC_004684.1 + 7502 0.66 0.677342
Target:  5'- --uGUCUACGcGCUGGccgccgCGCGCGUGa -3'
miRNA:   3'- gucCAGGUGCuUGGCCa-----GCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 1462 0.66 0.677342
Target:  5'- -uGGUCgAgacCGGGCCGGaCGUGCccgGUGCg -3'
miRNA:   3'- guCCAGgU---GCUUGGCCaGCGCG---CACG- -5'
19012 5' -57.9 NC_004684.1 + 4131 0.66 0.666853
Target:  5'- cCAGGUCCAgGAGCgcauCGG-CGCGgacacCGUGg -3'
miRNA:   3'- -GUCCAGGUgCUUG----GCCaGCGC-----GCACg -5'
19012 5' -57.9 NC_004684.1 + 39248 0.66 0.662649
Target:  5'- aCGGGUCCAagGAcuugcuuggaccacGCCGGUUcaGCGCcucuaucgacucgGUGCa -3'
miRNA:   3'- -GUCCAGGUg-CU--------------UGGCCAG--CGCG-------------CACG- -5'
19012 5' -57.9 NC_004684.1 + 64348 0.66 0.656335
Target:  5'- uCAcGUCCuuGAAcCCGGUCGgCGCGgucaGCu -3'
miRNA:   3'- -GUcCAGGugCUU-GGCCAGC-GCGCa---CG- -5'
19012 5' -57.9 NC_004684.1 + 59373 0.66 0.656335
Target:  5'- aCGGuGUCCugGAACCGcccggcggcacaGUCGCuGCacuUGCa -3'
miRNA:   3'- -GUC-CAGGugCUUGGC------------CAGCG-CGc--ACG- -5'
19012 5' -57.9 NC_004684.1 + 49923 0.66 0.645796
Target:  5'- cCAGGUCgAUGAGCaGGgCGCGUacgGUGUu -3'
miRNA:   3'- -GUCCAGgUGCUUGgCCaGCGCG---CACG- -5'
19012 5' -57.9 NC_004684.1 + 32211 0.66 0.642631
Target:  5'- gCAcGUCCGgGAGCCGGUUcgguaucgacagcgGCGCGaucuacUGCg -3'
miRNA:   3'- -GUcCAGGUgCUUGGCCAG--------------CGCGC------ACG- -5'
19012 5' -57.9 NC_004684.1 + 45605 0.66 0.631024
Target:  5'- aCAGGUCCAgcaccagcgcguCGGucuuGCCGGggaacaggcgcagCGCGCG-GCc -3'
miRNA:   3'- -GUCCAGGU------------GCU----UGGCCa------------GCGCGCaCG- -5'
19012 5' -57.9 NC_004684.1 + 793 0.67 0.624692
Target:  5'- -uGG-CCAaGAACCaGGUCGUGCGcgacgGCa -3'
miRNA:   3'- guCCaGGUgCUUGG-CCAGCGCGCa----CG- -5'
19012 5' -57.9 NC_004684.1 + 16130 0.67 0.624692
Target:  5'- ---cUgUACGAGCCGaucaugCGCGCGUGCg -3'
miRNA:   3'- guccAgGUGCUUGGCca----GCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 2020 0.67 0.624692
Target:  5'- gGGGUCCGCGAugACCG-UCGCccugGUG-GCc -3'
miRNA:   3'- gUCCAGGUGCU--UGGCcAGCG----CGCaCG- -5'
19012 5' -57.9 NC_004684.1 + 13755 0.67 0.623637
Target:  5'- aCGGGgugcUCCagcgcauGCGGguguCCGGgcCGCGCGUGCu -3'
miRNA:   3'- -GUCC----AGG-------UGCUu---GGCCa-GCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 7215 0.67 0.614145
Target:  5'- cCAGG-CCGCGu-CUGGgaGCGCGUGg -3'
miRNA:   3'- -GUCCaGGUGCuuGGCCagCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 1138 0.67 0.614145
Target:  5'- -cGG-CCACGGcauGCCGGgCGUGCcgaccGUGCa -3'
miRNA:   3'- guCCaGGUGCU---UGGCCaGCGCG-----CACG- -5'
19012 5' -57.9 NC_004684.1 + 48121 0.67 0.607823
Target:  5'- uCGGGUCCAcCGucCCGGUCgGCccggugaugaugggaGCGUuGCg -3'
miRNA:   3'- -GUCCAGGU-GCuuGGCCAG-CG---------------CGCA-CG- -5'
19012 5' -57.9 NC_004684.1 + 17400 0.67 0.603612
Target:  5'- -cGGUgCauuugACGAugCGG-CGCGCGUGa -3'
miRNA:   3'- guCCAgG-----UGCUugGCCaGCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 13083 0.67 0.603612
Target:  5'- -cGGUgCGCc--CCGGuUCGCGCgGUGCa -3'
miRNA:   3'- guCCAgGUGcuuGGCC-AGCGCG-CACG- -5'
19012 5' -57.9 NC_004684.1 + 58552 0.67 0.593102
Target:  5'- cCAGGcCCAUG-GCCaGUCGgGCGaugGCg -3'
miRNA:   3'- -GUCCaGGUGCuUGGcCAGCgCGCa--CG- -5'
19012 5' -57.9 NC_004684.1 + 60084 0.67 0.593102
Target:  5'- -cGG-CCAUG-GCCGGguUCGCGUgGUGCa -3'
miRNA:   3'- guCCaGGUGCuUGGCC--AGCGCG-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.