miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 5' -64.2 NC_004684.1 + 29237 0.66 0.381435
Target:  5'- gCUGUGGCGCgGCCCCauucaaGGCa----- -3'
miRNA:   3'- gGACGCCGUGgCGGGGg-----CCGccaucg -5'
19014 5' -64.2 NC_004684.1 + 7550 0.66 0.381435
Target:  5'- --cGCGGUgcuggACCGgCCCCG--GGUGGCg -3'
miRNA:   3'- ggaCGCCG-----UGGCgGGGGCcgCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 25785 0.66 0.381435
Target:  5'- aCCgGCGGCACgccgguguuCGUCaccaaCUGGCcgGGUGGCg -3'
miRNA:   3'- -GGaCGCCGUG---------GCGGg----GGCCG--CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 46653 0.66 0.380616
Target:  5'- gCCUGCGGUGCCuccaggcGCuCCUCGGguuCGGgGGUg -3'
miRNA:   3'- -GGACGCCGUGG-------CG-GGGGCC---GCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 2953 0.66 0.378981
Target:  5'- uCCgGCGcGCACaucgagaccaucggUGCCCUggaCGGCGGgGGCg -3'
miRNA:   3'- -GGaCGC-CGUG--------------GCGGGG---GCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 5886 0.66 0.378981
Target:  5'- aCUGCuGGCgcgcaucgagcGCCGCCgCCUGcGCGGcgacaucgacuaggUGGCa -3'
miRNA:   3'- gGACG-CCG-----------UGGCGG-GGGC-CGCC--------------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 41963 0.66 0.378165
Target:  5'- gCCUGgaGG-ACCGCaaggcguucuaugCCCGcGCGGUGGCc -3'
miRNA:   3'- -GGACg-CCgUGGCGg------------GGGC-CGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 58605 0.66 0.373294
Target:  5'- --cGCGGUGCUuugaucgacgGCCCgUGGCGGcUGGUg -3'
miRNA:   3'- ggaCGCCGUGG----------CGGGgGCCGCC-AUCG- -5'
19014 5' -64.2 NC_004684.1 + 3879 0.66 0.373294
Target:  5'- gCUGCGacGCcagGCCGCCCugCUGGCGcaGGCg -3'
miRNA:   3'- gGACGC--CG---UGGCGGG--GGCCGCcaUCG- -5'
19014 5' -64.2 NC_004684.1 + 61442 0.66 0.373294
Target:  5'- aCCgGCGGCAuugucUCGCCgCCGGUGcucGCg -3'
miRNA:   3'- -GGaCGCCGU-----GGCGGgGGCCGCcauCG- -5'
19014 5' -64.2 NC_004684.1 + 24495 0.66 0.372486
Target:  5'- gCCggggGCGGUGCCGCagggCCgcgcguuCGGCGGU-GCc -3'
miRNA:   3'- -GGa---CGCCGUGGCGg---GG-------GCCGCCAuCG- -5'
19014 5' -64.2 NC_004684.1 + 55011 0.66 0.370874
Target:  5'- aCCgaGCGcagacacaaCACCGCCCCCGGUaagccaguuagaccGGgGGCg -3'
miRNA:   3'- -GGa-CGCc--------GUGGCGGGGGCCG--------------CCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 39544 0.66 0.365271
Target:  5'- uCCUGCGuGCACagCGCgCUCGGUGcccAGCa -3'
miRNA:   3'- -GGACGC-CGUG--GCGgGGGCCGCca-UCG- -5'
19014 5' -64.2 NC_004684.1 + 36228 0.66 0.365271
Target:  5'- aUCUgGCccaGCACCGCCgCCGGguUGGUgAGCa -3'
miRNA:   3'- -GGA-CGc--CGUGGCGGgGGCC--GCCA-UCG- -5'
19014 5' -64.2 NC_004684.1 + 23451 0.66 0.365271
Target:  5'- aUCUGCuGGCcuCCauGCCCgacagcgugaCGGCGGUGGUg -3'
miRNA:   3'- -GGACG-CCGu-GG--CGGGg---------GCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 62771 0.66 0.364475
Target:  5'- cCUUGUGGUugUgguugguGCCugCCCGGCGGgguugccgGGCa -3'
miRNA:   3'- -GGACGCCGugG-------CGG--GGGCCGCCa-------UCG- -5'
19014 5' -64.2 NC_004684.1 + 26943 0.66 0.357368
Target:  5'- ----aGGUAUCGUCCCgauugccaaGGCGGUGGCc -3'
miRNA:   3'- ggacgCCGUGGCGGGGg--------CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 45760 0.66 0.357368
Target:  5'- gCCUGCucgguuggcaGGCGCa-CCUCCaGGCGGUcGCc -3'
miRNA:   3'- -GGACG----------CCGUGgcGGGGG-CCGCCAuCG- -5'
19014 5' -64.2 NC_004684.1 + 15277 0.66 0.352684
Target:  5'- cCCUgGUGGcCACCaGCCCgaCGuuuggcuggcgcgacGCGGUGGCa -3'
miRNA:   3'- -GGA-CGCC-GUGG-CGGGg-GC---------------CGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 19760 0.66 0.349586
Target:  5'- aCCUgcGCGGCcuGCCgguGCCCgCCGGgGGcgacaagaUGGCg -3'
miRNA:   3'- -GGA--CGCCG--UGG---CGGG-GGCCgCC--------AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.