miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 3' -62.6 NC_004684.1 + 29213 0.65 0.441468
Target:  5'- gUGGGaCGGCaacgGCCAGGacaugcuguggcGCGGC-CCCAu -3'
miRNA:   3'- gGCCC-GCCG----UGGUCCa-----------UGCCGuGGGU- -5'
19040 3' -62.6 NC_004684.1 + 54453 0.65 0.440559
Target:  5'- aCCGGG-GGUGCCGacggcggcgaaguuGGccgACGGCGCaCCGg -3'
miRNA:   3'- -GGCCCgCCGUGGU--------------CCa--UGCCGUG-GGU- -5'
19040 3' -62.6 NC_004684.1 + 65347 0.65 0.440559
Target:  5'- aCGauGGCGGCccccagggccACCAGGgcgACGGUcaucgcggacccccACCCAg -3'
miRNA:   3'- gGC--CCGCCG----------UGGUCCa--UGCCG--------------UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 13122 0.66 0.437837
Target:  5'- gCCGGGUGGCggcgcuggcugaggaGCUgucccGGcGCGGUGCCCu -3'
miRNA:   3'- -GGCCCGCCG---------------UGGu----CCaUGCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 48680 0.66 0.434223
Target:  5'- aCCGGGCauguagaGCACUuuggucuugAGcGUGCGGCgGCCCu -3'
miRNA:   3'- -GGCCCGc------CGUGG---------UC-CAUGCCG-UGGGu -5'
19040 3' -62.6 NC_004684.1 + 43721 0.66 0.434223
Target:  5'- uCCGGGCcG-ACCAGGccguCGGUguACCCGg -3'
miRNA:   3'- -GGCCCGcCgUGGUCCau--GCCG--UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 37927 0.66 0.434223
Target:  5'- gCUGGuCGcGCACCAGGUcgaugucgaacCGGuCGCCCAg -3'
miRNA:   3'- -GGCCcGC-CGUGGUCCAu----------GCC-GUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 60353 0.66 0.434223
Target:  5'- uUCGGccaGCGGUGCCaggucggucAGGUugGGCAUgCCGg -3'
miRNA:   3'- -GGCC---CGCCGUGG---------UCCAugCCGUG-GGU- -5'
19040 3' -62.6 NC_004684.1 + 63473 0.66 0.434223
Target:  5'- uCCaGGUGGUcaGCgGGGUcuuccCGGUACCCGg -3'
miRNA:   3'- -GGcCCGCCG--UGgUCCAu----GCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 45777 0.66 0.433322
Target:  5'- gCCGGuGCGGUACCGGucguagaccuGUucgcgcucggcguGCGGCauugACCCGg -3'
miRNA:   3'- -GGCC-CGCCGUGGUC----------CA-------------UGCCG----UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 47330 0.66 0.431524
Target:  5'- gCCGGuGUGGgcgucgagcauggcCACCAGGccACGGUaggACCCGg -3'
miRNA:   3'- -GGCC-CGCC--------------GUGGUCCa-UGCCG---UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 6651 0.66 0.425264
Target:  5'- aCCcGGCGGcCACCcGGUcGCcgGGCACCUc -3'
miRNA:   3'- -GGcCCGCC-GUGGuCCA-UG--CCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 66483 0.66 0.425264
Target:  5'- aCCcGGUGGCgGCUAGGccuugGCGGCGgCCu -3'
miRNA:   3'- -GGcCCGCCG-UGGUCCa----UGCCGUgGGu -5'
19040 3' -62.6 NC_004684.1 + 9142 0.66 0.425264
Target:  5'- aCCGccuCGGCGCggCAGGUGCGGCAacugaCCu -3'
miRNA:   3'- -GGCcc-GCCGUG--GUCCAUGCCGUg----GGu -5'
19040 3' -62.6 NC_004684.1 + 46118 0.66 0.425264
Target:  5'- gCCGGGCGcGCguGCCGGGgu-GGUugACCUg -3'
miRNA:   3'- -GGCCCGC-CG--UGGUCCaugCCG--UGGGu -5'
19040 3' -62.6 NC_004684.1 + 64916 0.66 0.424374
Target:  5'- uCUuGGCGGCGacCCAGGUgGCGGCggugagcGCCUg -3'
miRNA:   3'- -GGcCCGCCGU--GGUCCA-UGCCG-------UGGGu -5'
19040 3' -62.6 NC_004684.1 + 43765 0.66 0.416416
Target:  5'- aCCGGcGUGGUcagGCCGGGUACGucGUGCUUg -3'
miRNA:   3'- -GGCC-CGCCG---UGGUCCAUGC--CGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 8620 0.66 0.416416
Target:  5'- cCCGGuGCaccGGCACCGccgauccuCGGCACCCc -3'
miRNA:   3'- -GGCC-CG---CCGUGGUccau----GCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 59513 0.66 0.416416
Target:  5'- aCCGGGCGcgucguaggccuGCGCaCAGGUccugcaccgccaGCGcGCGCCg- -3'
miRNA:   3'- -GGCCCGC------------CGUG-GUCCA------------UGC-CGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 33475 0.66 0.416416
Target:  5'- uCgGcGGCGGCugCGGuGgacgcgGCGGCgGCCCu -3'
miRNA:   3'- -GgC-CCGCCGugGUC-Ca-----UGCCG-UGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.