Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19040 | 5' | -57.3 | NC_004684.1 | + | 32192 | 1.1 | 0.00071 |
Target: 5'- aGGUGGACACCGGCACCCAGUUCCACUg -3' miRNA: 3'- -CCACCUGUGGCCGUGGGUCAAGGUGA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 54392 | 0.67 | 0.59133 |
Target: 5'- cGGgGGACAuaauccacccggcCCGGCGCUCGGUguugccugCCGCc -3' miRNA: 3'- -CCaCCUGU-------------GGCCGUGGGUCAa-------GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 63767 | 0.67 | 0.61795 |
Target: 5'- aGGUGGcGCGCuuCGGCcacucguguucggcgGCCCAGUgcgcgacguacUCCACg -3' miRNA: 3'- -CCACC-UGUG--GCCG---------------UGGGUCA-----------AGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 25569 | 0.66 | 0.688203 |
Target: 5'- --cGGugGCCaGCGCCUccgGGUggUCCACg -3' miRNA: 3'- ccaCCugUGGcCGUGGG---UCA--AGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 9223 | 0.73 | 0.277401 |
Target: 5'- uGGUGGcggcacagucGCACCGGCucCCCGGUgaucgCCAUg -3' miRNA: 3'- -CCACC----------UGUGGCCGu-GGGUCAa----GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 35913 | 0.73 | 0.298451 |
Target: 5'- cGUGGGCuCCGGCACCgCAGcgCgCGCg -3' miRNA: 3'- cCACCUGuGGCCGUGG-GUCaaG-GUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 14564 | 0.72 | 0.352305 |
Target: 5'- -cUGGACACCuGGUGCgCCGGggCCACc -3' miRNA: 3'- ccACCUGUGG-CCGUG-GGUCaaGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 5681 | 0.71 | 0.368905 |
Target: 5'- cGGaGGugGCCGGgGCCCGGccugcCCACg -3' miRNA: 3'- -CCaCCugUGGCCgUGGGUCaa---GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 52594 | 0.68 | 0.519254 |
Target: 5'- cGGUGGACAgCGcGCcgccguaguuguGCgCCAGUacgUCCACg -3' miRNA: 3'- -CCACCUGUgGC-CG------------UG-GGUCA---AGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 59784 | 0.67 | 0.589207 |
Target: 5'- --cGGGCACCGGaugaaguacacgacCACCgGGUUgCCGCg -3' miRNA: 3'- ccaCCUGUGGCC--------------GUGGgUCAA-GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 46337 | 0.68 | 0.550249 |
Target: 5'- cGGUcaGCACCGGCACCCG--UgCACg -3' miRNA: 3'- -CCAccUGUGGCCGUGGGUcaAgGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 7518 | 0.68 | 0.519254 |
Target: 5'- gGGUGGACcugcCCGGCACCgAccuggCCGCc -3' miRNA: 3'- -CCACCUGu---GGCCGUGGgUcaa--GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 65756 | 0.83 | 0.063699 |
Target: 5'- -uUGGGCGCCGGUACCCGGUUgCGCc -3' miRNA: 3'- ccACCUGUGGCCGUGGGUCAAgGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 9556 | 0.68 | 0.571227 |
Target: 5'- gGGcGGGUACCGGCGgCCAGcaCCGCc -3' miRNA: 3'- -CCaCCUGUGGCCGUgGGUCaaGGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 40355 | 0.75 | 0.227071 |
Target: 5'- aGGcUGGACacaaugccACCGGCACCCGGUgCCugGCUg -3' miRNA: 3'- -CC-ACCUG--------UGGCCGUGGGUCAaGG--UGA- -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 7931 | 0.69 | 0.459542 |
Target: 5'- uGGUGGACaucgccgccgACCGGCGCacaCCGGUgggcaaggCCGCc -3' miRNA: 3'- -CCACCUG----------UGGCCGUG---GGUCAa-------GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 6569 | 0.67 | 0.58179 |
Target: 5'- cGGUGaGuCcguguCCGGCACCUGGUacgCCACg -3' miRNA: 3'- -CCAC-CuGu----GGCCGUGGGUCAa--GGUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 43293 | 0.67 | 0.603025 |
Target: 5'- --cGGGCugCGGCACCUugaAGUUCgGg- -3' miRNA: 3'- ccaCCUGugGCCGUGGG---UCAAGgUga -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 3446 | 0.74 | 0.23888 |
Target: 5'- cGUGGcCAUgugguaCGGCACCCAGUUCgGCg -3' miRNA: 3'- cCACCuGUG------GCCGUGGGUCAAGgUGa -5' |
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19040 | 5' | -57.3 | NC_004684.1 | + | 25170 | 0.72 | 0.328411 |
Target: 5'- cGGUGccGACACCGGCGgCCAcGUcggccaccagcUCCACg -3' miRNA: 3'- -CCAC--CUGUGGCCGUgGGU-CA-----------AGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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