miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 5' -58.3 NC_004684.1 + 26575 0.66 0.633844
Target:  5'- cGCCC--UGGCGCGCGGcGGUguGCGcGGg -3'
miRNA:   3'- -UGGGcaGCCGCGCGUU-CUAguCGC-UC- -5'
19046 5' -58.3 NC_004684.1 + 38238 0.66 0.629588
Target:  5'- aGCCUGUCGGCcaGCGCAuguccccggagcuGAUCGcCGAa -3'
miRNA:   3'- -UGGGCAGCCG--CGCGUu------------CUAGUcGCUc -5'
19046 5' -58.3 NC_004684.1 + 38407 0.66 0.623203
Target:  5'- gGCCUccCGGuCGCGCAGGcUCAGCu-- -3'
miRNA:   3'- -UGGGcaGCC-GCGCGUUCuAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 10350 0.66 0.623203
Target:  5'- cCCCGcCGGggaggacaUGCGCGAGAUCGcGCGc- -3'
miRNA:   3'- uGGGCaGCC--------GCGCGUUCUAGU-CGCuc -5'
19046 5' -58.3 NC_004684.1 + 27787 0.66 0.623203
Target:  5'- cGCCCGaCGGUGCGCGgcGGuUCGGUc-- -3'
miRNA:   3'- -UGGGCaGCCGCGCGU--UCuAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 43431 0.66 0.612569
Target:  5'- gGCCCGgcgaggccgaggUCGGUGCgGCGGGcgCGGCa-- -3'
miRNA:   3'- -UGGGC------------AGCCGCG-CGUUCuaGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 44959 0.66 0.612569
Target:  5'- uGCCCGUCaaGGaCGCGCGAcgcCAGCGcGa -3'
miRNA:   3'- -UGGGCAG--CC-GCGCGUUcuaGUCGCuC- -5'
19046 5' -58.3 NC_004684.1 + 61331 0.66 0.612569
Target:  5'- cGCCC-UCGGCgGCGUAGGuggCGGCcAGg -3'
miRNA:   3'- -UGGGcAGCCG-CGCGUUCua-GUCGcUC- -5'
19046 5' -58.3 NC_004684.1 + 47235 0.66 0.612569
Target:  5'- cGCaCCGccUCGG-GCGCGAGggUAGCGGc -3'
miRNA:   3'- -UG-GGC--AGCCgCGCGUUCuaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 44434 0.66 0.601951
Target:  5'- --gCGUUGGCGCGCuucuGGccuUCGGCGGu -3'
miRNA:   3'- uggGCAGCCGCGCGu---UCu--AGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 64637 0.66 0.601951
Target:  5'- -gCCGUCGGCGUcguggcgcaccGCGAuGUCGGCGc- -3'
miRNA:   3'- ugGGCAGCCGCG-----------CGUUcUAGUCGCuc -5'
19046 5' -58.3 NC_004684.1 + 64359 0.66 0.591358
Target:  5'- aACCCgGUCGGCGCG----GUCAGCu-- -3'
miRNA:   3'- -UGGG-CAGCCGCGCguucUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 22443 0.66 0.591358
Target:  5'- -gCCGUCGGCGCGg-----CGGCGAu -3'
miRNA:   3'- ugGGCAGCCGCGCguucuaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 11592 0.66 0.591358
Target:  5'- aGCCCGcCGGUGCGCcuGGAcgaCGGCa-- -3'
miRNA:   3'- -UGGGCaGCCGCGCGu-UCUa--GUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 26633 0.66 0.591358
Target:  5'- gACaCCGUCGGCGCG-GAGuUCuuCGGGg -3'
miRNA:   3'- -UG-GGCAGCCGCGCgUUCuAGucGCUC- -5'
19046 5' -58.3 NC_004684.1 + 54620 0.66 0.591358
Target:  5'- cCUCGUUGGC-CGCAGGcgCAGCc-- -3'
miRNA:   3'- uGGGCAGCCGcGCGUUCuaGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 10578 0.66 0.588185
Target:  5'- cCCCGccgauccggcugguUCGGCGCGCGAGGU--GCGc- -3'
miRNA:   3'- uGGGC--------------AGCCGCGCGUUCUAguCGCuc -5'
19046 5' -58.3 NC_004684.1 + 57503 0.66 0.580796
Target:  5'- cACUCGUCGGCggccugcuccuGCGCGgcgucgGGAUcCGGCGGc -3'
miRNA:   3'- -UGGGCAGCCG-----------CGCGU------UCUA-GUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 52322 0.66 0.580796
Target:  5'- aGCUgCG-CGGUGCGCAGGc-CAGCGAa -3'
miRNA:   3'- -UGG-GCaGCCGCGCGUUCuaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 64559 0.66 0.580796
Target:  5'- gACCgGgUUGGUGCGCAGGAUC-GUGu- -3'
miRNA:   3'- -UGGgC-AGCCGCGCGUUCUAGuCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.