miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 5' -56.7 NC_004684.1 + 12490 0.66 0.637056
Target:  5'- -cGGCCAccagGGcCGCCUcGUGCCGCAc--- -3'
miRNA:   3'- uaCCGGU----UC-GUGGA-CACGGUGUaccu -5'
19049 5' -56.7 NC_004684.1 + 25195 0.66 0.637055
Target:  5'- uUGGCCAGGCGCUggcaCCGgGUGGc -3'
miRNA:   3'- uACCGGUUCGUGGacacGGUgUACCu -5'
19049 5' -56.7 NC_004684.1 + 50544 0.66 0.637055
Target:  5'- cAUGGCUGAGUugGCCUuucGUGgUugGUGGAg -3'
miRNA:   3'- -UACCGGUUCG--UGGA---CACgGugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 39145 0.66 0.626037
Target:  5'- cUGGCCGGGUccaccGCgCUGUGCUccGgGUGGGc -3'
miRNA:   3'- uACCGGUUCG-----UG-GACACGG--UgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 27629 0.66 0.626037
Target:  5'- -cGGCCAGGaCGCCa-UGCCACccGGu -3'
miRNA:   3'- uaCCGGUUC-GUGGacACGGUGuaCCu -5'
19049 5' -56.7 NC_004684.1 + 283 0.66 0.626037
Target:  5'- cAUGGCC-AGUACaaaccgauCUGUGCCAaCAUcGGGa -3'
miRNA:   3'- -UACCGGuUCGUG--------GACACGGU-GUA-CCU- -5'
19049 5' -56.7 NC_004684.1 + 15682 0.66 0.626037
Target:  5'- cGUGGCCAgcggcGGCACCgacGCCACcgGc- -3'
miRNA:   3'- -UACCGGU-----UCGUGGacaCGGUGuaCcu -5'
19049 5' -56.7 NC_004684.1 + 36910 0.66 0.626037
Target:  5'- cUGGCCGguGGCAUCgcccgGUcgagGCCGgGUGGAc -3'
miRNA:   3'- uACCGGU--UCGUGGa----CA----CGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 4114 0.66 0.615024
Target:  5'- -aGGCCAacuGGCcaaGCCUGUaCCugAUGGu -3'
miRNA:   3'- uaCCGGU---UCG---UGGACAcGGugUACCu -5'
19049 5' -56.7 NC_004684.1 + 16222 0.66 0.604026
Target:  5'- cAUGGCCcGGCGCaucgGCCACAccgaGGAg -3'
miRNA:   3'- -UACCGGuUCGUGgacaCGGUGUa---CCU- -5'
19049 5' -56.7 NC_004684.1 + 22057 0.66 0.604026
Target:  5'- -aGcGCCAGGCACaguCUG-GCUACcgGGAc -3'
miRNA:   3'- uaC-CGGUUCGUG---GACaCGGUGuaCCU- -5'
19049 5' -56.7 NC_004684.1 + 46116 0.66 0.604026
Target:  5'- -cGGCCGGGCGCgC-GUGCCgGgGUGGu -3'
miRNA:   3'- uaCCGGUUCGUG-GaCACGG-UgUACCu -5'
19049 5' -56.7 NC_004684.1 + 3389 0.66 0.602927
Target:  5'- -cGG-CAAGCGCCUGgagaccGCCGCcaaggugAUGGAg -3'
miRNA:   3'- uaCCgGUUCGUGGACa-----CGGUG-------UACCU- -5'
19049 5' -56.7 NC_004684.1 + 29763 0.67 0.582111
Target:  5'- cAUGGCCAGcGCACCgacggcGUuCgGCAUGGGc -3'
miRNA:   3'- -UACCGGUU-CGUGGa-----CAcGgUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 36230 0.67 0.582111
Target:  5'- cUGGCCcAGCACC---GCCGCcgGGu -3'
miRNA:   3'- uACCGGuUCGUGGacaCGGUGuaCCu -5'
19049 5' -56.7 NC_004684.1 + 16470 0.67 0.571212
Target:  5'- -aGGCCGGGCuguCCg--GCCACGUGc- -3'
miRNA:   3'- uaCCGGUUCGu--GGacaCGGUGUACcu -5'
19049 5' -56.7 NC_004684.1 + 57306 0.67 0.571212
Target:  5'- uGUGGCUGAGCACCcGgcgcaCCACggGGGu -3'
miRNA:   3'- -UACCGGUUCGUGGaCac---GGUGuaCCU- -5'
19049 5' -56.7 NC_004684.1 + 9893 0.67 0.560363
Target:  5'- -cGGCgCAGGCACCUgcGUGCgGCgcuugucgacgGUGGGc -3'
miRNA:   3'- uaCCG-GUUCGUGGA--CACGgUG-----------UACCU- -5'
19049 5' -56.7 NC_004684.1 + 36317 0.67 0.560362
Target:  5'- gGUGGaCCAAcaacuCGCCgGUGCCGCAgUGGGu -3'
miRNA:   3'- -UACC-GGUUc----GUGGaCACGGUGU-ACCU- -5'
19049 5' -56.7 NC_004684.1 + 62503 0.67 0.549571
Target:  5'- gGUGGCgacCAGGcCGCCUGaGCCGCcuucaAUGGAc -3'
miRNA:   3'- -UACCG---GUUC-GUGGACaCGGUG-----UACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.