miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19052 3' -53.3 NC_004684.1 + 59171 0.66 0.855412
Target:  5'- uGCCUgCGAAGGUG-AgCAGG-UAGCGc -3'
miRNA:   3'- -CGGAaGUUUCCACaUgGUCCgGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 60258 0.66 0.855412
Target:  5'- aCCUUCc-GGGUGUACCucGGCgguGGCGg -3'
miRNA:   3'- cGGAAGuuUCCACAUGGu-CCGg--UCGU- -5'
19052 3' -53.3 NC_004684.1 + 39671 0.66 0.855412
Target:  5'- --gUUCAAAGGUGc-CCGGGCC-GUAu -3'
miRNA:   3'- cggAAGUUUCCACauGGUCCGGuCGU- -5'
19052 3' -53.3 NC_004684.1 + 25826 0.66 0.855412
Target:  5'- cGCCgaagCA-AGGUGUcgcACCcGGCCAGg- -3'
miRNA:   3'- -CGGaa--GUuUCCACA---UGGuCCGGUCgu -5'
19052 3' -53.3 NC_004684.1 + 52496 0.66 0.846827
Target:  5'- gGCCa-CGAAGGUGU-CCAGGUuCuGCGg -3'
miRNA:   3'- -CGGaaGUUUCCACAuGGUCCG-GuCGU- -5'
19052 3' -53.3 NC_004684.1 + 11993 0.66 0.841565
Target:  5'- cGCCagcgcagCGAAGGUuuccggcgcgauCCGGGCCAGCu -3'
miRNA:   3'- -CGGaa-----GUUUCCAcau---------GGUCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 14297 0.66 0.838011
Target:  5'- gGCCUUgCAGgccgccgcgcAGGUGUacGCCGGuaCCAGCGa -3'
miRNA:   3'- -CGGAA-GUU----------UCCACA--UGGUCc-GGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 24974 0.66 0.838011
Target:  5'- -gCUUCc--GGUGUcCCAGGgCGGCAu -3'
miRNA:   3'- cgGAAGuuuCCACAuGGUCCgGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 43274 0.66 0.828973
Target:  5'- gGCUgcugCGucGGcGUGCCGGGCUgcGGCAc -3'
miRNA:   3'- -CGGaa--GUuuCCaCAUGGUCCGG--UCGU- -5'
19052 3' -53.3 NC_004684.1 + 28067 0.66 0.828973
Target:  5'- gGCCc-CGgcGGUGUgGCCGGGCCGccGCGc -3'
miRNA:   3'- -CGGaaGUuuCCACA-UGGUCCGGU--CGU- -5'
19052 3' -53.3 NC_004684.1 + 62490 0.66 0.828973
Target:  5'- uGCCgcCGAGgccGGUGgcgACCAGGCC-GCc -3'
miRNA:   3'- -CGGaaGUUU---CCACa--UGGUCCGGuCGu -5'
19052 3' -53.3 NC_004684.1 + 29747 0.66 0.819724
Target:  5'- uGCCUgaccGGGcg-GCCAuGGCCAGCGc -3'
miRNA:   3'- -CGGAaguuUCCacaUGGU-CCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 43074 0.66 0.810272
Target:  5'- cGUCcUCGucGGUGUAggcgacgaagauCCAGGCCGGg- -3'
miRNA:   3'- -CGGaAGUuuCCACAU------------GGUCCGGUCgu -5'
19052 3' -53.3 NC_004684.1 + 49214 0.66 0.810272
Target:  5'- gGCCagUCGGucG-GUGCCGGGCCgGGCGu -3'
miRNA:   3'- -CGGa-AGUUucCaCAUGGUCCGG-UCGU- -5'
19052 3' -53.3 NC_004684.1 + 41196 0.67 0.800629
Target:  5'- uGCUgaUCAAAGGcg-ACCAGacGCCAGCGg -3'
miRNA:   3'- -CGGa-AGUUUCCacaUGGUC--CGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 47681 0.67 0.800629
Target:  5'- cGCCUucuugUCGAAGGUGaUGCU-GGUUGGCGc -3'
miRNA:   3'- -CGGA-----AGUUUCCAC-AUGGuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 67091 0.67 0.800629
Target:  5'- gGCCU-CGgcGGccagcgaacucuUGUGCCAGGUguGCAc -3'
miRNA:   3'- -CGGAaGUuuCC------------ACAUGGUCCGguCGU- -5'
19052 3' -53.3 NC_004684.1 + 62276 0.67 0.799654
Target:  5'- gGCCUUCAGcAGGU---CCAGGCgcugcucCAGCGc -3'
miRNA:   3'- -CGGAAGUU-UCCAcauGGUCCG-------GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 36975 0.67 0.790805
Target:  5'- cGCCgUCGAacAGGUGuUGCCAcGG-CAGCGc -3'
miRNA:   3'- -CGGaAGUU--UCCAC-AUGGU-CCgGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 25710 0.67 0.790805
Target:  5'- cGCCgcgcuGGGUGuUGCCgAGGUCGGCc -3'
miRNA:   3'- -CGGaaguuUCCAC-AUGG-UCCGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.