miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 5' -53.5 NC_004684.1 + 66480 0.65 0.900232
Target:  5'- gCCACCcgGUGGCGGcUAGGccuuggcggcggccUCGcg-GGCCg -3'
miRNA:   3'- -GGUGG--CGCUGCC-AUCC--------------AGCuuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 60755 0.66 0.895449
Target:  5'- gCCGCCGgGugGGgguuGGUCaGGAcuugaagaUGGCg -3'
miRNA:   3'- -GGUGGCgCugCCau--CCAG-CUU--------AUCGg -5'
19053 5' -53.5 NC_004684.1 + 29292 0.66 0.891251
Target:  5'- gCACCGCGaacuccgacgGCGGUGGuuuguacccgucgccGUUGAGcuucuUGGCCu -3'
miRNA:   3'- gGUGGCGC----------UGCCAUC---------------CAGCUU-----AUCGG- -5'
19053 5' -53.5 NC_004684.1 + 12966 0.66 0.888401
Target:  5'- cCCGCCGacCGGCGGcAGGcaacacCGAGcgccgGGCCg -3'
miRNA:   3'- -GGUGGC--GCUGCCaUCCa-----GCUUa----UCGG- -5'
19053 5' -53.5 NC_004684.1 + 22990 0.66 0.888401
Target:  5'- aCCGCUGaucaACGGccUGGGcCGAcUGGCCg -3'
miRNA:   3'- -GGUGGCgc--UGCC--AUCCaGCUuAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 58315 0.66 0.888401
Target:  5'- cUCACCgGCGACGccGGGUC--AUGGCg -3'
miRNA:   3'- -GGUGG-CGCUGCcaUCCAGcuUAUCGg -5'
19053 5' -53.5 NC_004684.1 + 36176 0.66 0.888401
Target:  5'- gUCACCgGCGuCGGccAGGUCGucuuccaGGCCc -3'
miRNA:   3'- -GGUGG-CGCuGCCa-UCCAGCuua----UCGG- -5'
19053 5' -53.5 NC_004684.1 + 30725 0.66 0.881102
Target:  5'- gCCGCCGuCGAUGGU-GGU-----GGCCu -3'
miRNA:   3'- -GGUGGC-GCUGCCAuCCAgcuuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 5961 0.66 0.881102
Target:  5'- -gGCCGCGcCGGUGaG-CGAccGGCCg -3'
miRNA:   3'- ggUGGCGCuGCCAUcCaGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 65656 0.66 0.881102
Target:  5'- aCCGCCcucgGUGGUGGUgAGGUCGcggcacUGGCCg -3'
miRNA:   3'- -GGUGG----CGCUGCCA-UCCAGCuu----AUCGG- -5'
19053 5' -53.5 NC_004684.1 + 52801 0.66 0.873557
Target:  5'- aCgACgGUaGGCGGUAGGcgUGAAcGGCCu -3'
miRNA:   3'- -GgUGgCG-CUGCCAUCCa-GCUUaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 2826 0.66 0.873557
Target:  5'- uCCugCGCG--GGUGGGUgGAugAGCa -3'
miRNA:   3'- -GGugGCGCugCCAUCCAgCUuaUCGg -5'
19053 5' -53.5 NC_004684.1 + 15230 0.66 0.873557
Target:  5'- aCACCaguggguguuugGUGGCGGUuacGUCGA-UGGCCu -3'
miRNA:   3'- gGUGG------------CGCUGCCAuc-CAGCUuAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 47283 0.66 0.865773
Target:  5'- gCCGCCGCccaGCGGUGGcuggaccuugucGUCGGGguugaacGCCa -3'
miRNA:   3'- -GGUGGCGc--UGCCAUC------------CAGCUUau-----CGG- -5'
19053 5' -53.5 NC_004684.1 + 6069 0.66 0.865773
Target:  5'- aCGCCGCGcUGGUAGc-CGAu--GCCg -3'
miRNA:   3'- gGUGGCGCuGCCAUCcaGCUuauCGG- -5'
19053 5' -53.5 NC_004684.1 + 63586 0.66 0.865773
Target:  5'- gCCugCGCGGCGcGgcGGUgGuuaccGCCu -3'
miRNA:   3'- -GGugGCGCUGC-CauCCAgCuuau-CGG- -5'
19053 5' -53.5 NC_004684.1 + 7710 0.66 0.865773
Target:  5'- gUCGCCGUGGCGcu-GGcCGug-AGCCa -3'
miRNA:   3'- -GGUGGCGCUGCcauCCaGCuuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 58104 0.66 0.865773
Target:  5'- gCCACCGuCGGCGucGGGaacUCGAcaucGGCCa -3'
miRNA:   3'- -GGUGGC-GCUGCcaUCC---AGCUua--UCGG- -5'
19053 5' -53.5 NC_004684.1 + 40217 0.66 0.865773
Target:  5'- aUCGCCGUGGCc--AGGUCGccgccGUAGCUg -3'
miRNA:   3'- -GGUGGCGCUGccaUCCAGCu----UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 30319 0.66 0.865773
Target:  5'- gCACCGCGAacaGGcAGG-CGAucuGCUg -3'
miRNA:   3'- gGUGGCGCUg--CCaUCCaGCUuauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.