miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 5' -54.7 NC_004684.1 + 14380 0.66 0.819128
Target:  5'- aGCG-CGcUGGUGGC---GCugGACGACg -3'
miRNA:   3'- -CGUaGC-ACUACCGgcuCGugCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 43769 0.66 0.809908
Target:  5'- ---gCGUGGUcaGGCCGGGUACGuCGuGCu -3'
miRNA:   3'- cguaGCACUA--CCGGCUCGUGCuGC-UG- -5'
19066 5' -54.7 NC_004684.1 + 3569 0.66 0.809908
Target:  5'- -gGUCGUGGUGcGCCacagcGGGgACGugGAg -3'
miRNA:   3'- cgUAGCACUAC-CGG-----CUCgUGCugCUg -5'
19066 5' -54.7 NC_004684.1 + 57529 0.66 0.809908
Target:  5'- gGCGUCGgGAUccGGCgGcAGCucacCGGCGGCg -3'
miRNA:   3'- -CGUAGCaCUA--CCGgC-UCGu---GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 22370 0.66 0.809908
Target:  5'- gGCAUCGUcGGU-GCCGAcgGCAUGACcaaGGCc -3'
miRNA:   3'- -CGUAGCA-CUAcCGGCU--CGUGCUG---CUG- -5'
19066 5' -54.7 NC_004684.1 + 11382 0.66 0.809908
Target:  5'- aGCGUgGUGGUGcgcgacuuGCCGcGCGCGAUGu- -3'
miRNA:   3'- -CGUAgCACUAC--------CGGCuCGUGCUGCug -5'
19066 5' -54.7 NC_004684.1 + 29381 0.66 0.80523
Target:  5'- gGCGUUGUGGcaccagaUGGCCGAGgacaaggccaucaACGuCGACc -3'
miRNA:   3'- -CGUAGCACU-------ACCGGCUCg------------UGCuGCUG- -5'
19066 5' -54.7 NC_004684.1 + 371 0.66 0.800508
Target:  5'- cCAUgCGcGAccUGGCCGAGaC-CGACGGCc -3'
miRNA:   3'- cGUA-GCaCU--ACCGGCUC-GuGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 16574 0.66 0.800507
Target:  5'- --uUCcUGAcccgcugGGCCaAGCGCGACGACu -3'
miRNA:   3'- cguAGcACUa------CCGGcUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 41067 0.66 0.799558
Target:  5'- cGCGUCGgcaaucGGcggcccggcggccUGGCCGAGCugcguacCGAUGGCc -3'
miRNA:   3'- -CGUAGCa-----CU-------------ACCGGCUCGu------GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 19579 0.66 0.798606
Target:  5'- gGCGUCGUGcaccugcccaguccgGcGGCCGAggugcuggcggugacGCuCGGCGACa -3'
miRNA:   3'- -CGUAGCAC---------------UaCCGGCU---------------CGuGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 27865 0.66 0.790936
Target:  5'- cGCAggaGUGccGGUCGcugcucGGCuACGACGACa -3'
miRNA:   3'- -CGUag-CACuaCCGGC------UCG-UGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 66142 0.66 0.790935
Target:  5'- cGCAUC-UGGgccggGGCCGGGCGacCGACcaGGCc -3'
miRNA:   3'- -CGUAGcACUa----CCGGCUCGU--GCUG--CUG- -5'
19066 5' -54.7 NC_004684.1 + 32305 0.66 0.790935
Target:  5'- gGCAcCGacggcUGAUGGuuGAGCGCGAa-GCu -3'
miRNA:   3'- -CGUaGC-----ACUACCggCUCGUGCUgcUG- -5'
19066 5' -54.7 NC_004684.1 + 27709 0.66 0.790935
Target:  5'- uCAUCucGgcGGCCGAGCGCGAgcaCGAg -3'
miRNA:   3'- cGUAGcaCuaCCGGCUCGUGCU---GCUg -5'
19066 5' -54.7 NC_004684.1 + 6387 0.66 0.781202
Target:  5'- cGCAgCGUGuuggcgaaguUGGCCGAGgUguacagcucgGCGGCGGCg -3'
miRNA:   3'- -CGUaGCACu---------ACCGGCUC-G----------UGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 3669 0.66 0.781202
Target:  5'- uCAUCGUacGGUGGCCcGGCAccgccuccCGcACGACa -3'
miRNA:   3'- cGUAGCA--CUACCGGcUCGU--------GC-UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 54908 0.67 0.77529
Target:  5'- gGCGgcccUGGUGGCCGAGCGuCGcaaagagugcuucgaGCGGCu -3'
miRNA:   3'- -CGUagc-ACUACCGGCUCGU-GC---------------UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 39515 0.67 0.771319
Target:  5'- -uGUCGUcGUaGCCGAGCAgCGAcCGGCa -3'
miRNA:   3'- cgUAGCAcUAcCGGCUCGU-GCU-GCUG- -5'
19066 5' -54.7 NC_004684.1 + 6815 0.67 0.771319
Target:  5'- cGCggCGUGGagacauaccagcUGGUCGAGUucgaggguguCGACGGCa -3'
miRNA:   3'- -CGuaGCACU------------ACCGGCUCGu---------GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.