miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 5' -61.9 NC_004684.1 + 11521 0.66 0.4201
Target:  5'- gGCAc-CGCucGGUGGgCCUGGgCCACa -3'
miRNA:   3'- -CGUucGCGcaCCACCgGGACCgGGUG- -5'
19067 5' -61.9 NC_004684.1 + 28245 0.66 0.4201
Target:  5'- aGCAcAGCGCgGUGGacccGGCcagCCUGGUgCGCg -3'
miRNA:   3'- -CGU-UCGCG-CACCa---CCG---GGACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 21310 0.66 0.4201
Target:  5'- cGCAGGCGagGcGGUGGUCC-GGCgcgaCCGCc -3'
miRNA:   3'- -CGUUCGCg-CaCCACCGGGaCCG----GGUG- -5'
19067 5' -61.9 NC_004684.1 + 37667 0.66 0.4201
Target:  5'- uGUcGGCGUugacgaUGGUcuggaGGUUCUGGCCCACg -3'
miRNA:   3'- -CGuUCGCGc-----ACCA-----CCGGGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 44520 0.66 0.4201
Target:  5'- aGCGucuuGGcCGcCGUGGUGGCCCggacgaacccGGUCgGCa -3'
miRNA:   3'- -CGU----UC-GC-GCACCACCGGGa---------CCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 3905 0.66 0.411143
Target:  5'- cGCAGGCGCagcUGGaGGCCUcGcGCCCcCg -3'
miRNA:   3'- -CGUUCGCGc--ACCaCCGGGaC-CGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 16339 0.66 0.411143
Target:  5'- aGCGAGgaGCG-GcUGGCgCUGGCCgACa -3'
miRNA:   3'- -CGUUCg-CGCaCcACCGgGACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 49540 0.66 0.411143
Target:  5'- gGCGGuGUGCGcGGUGGCCgacuucgGGCUgGCg -3'
miRNA:   3'- -CGUU-CGCGCaCCACCGGga-----CCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 56140 0.66 0.402307
Target:  5'- cCAAGaaaCGaUGagcGUGGCCCUGGCCgACg -3'
miRNA:   3'- cGUUCgc-GC-AC---CACCGGGACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 16209 0.66 0.402307
Target:  5'- -aGGGCGCGcGGUccauGGCCCggcgcaucGGCCaCACc -3'
miRNA:   3'- cgUUCGCGCaCCA----CCGGGa-------CCGG-GUG- -5'
19067 5' -61.9 NC_004684.1 + 46188 0.66 0.393591
Target:  5'- cGCcuGCGCGUGcuUGGCCCggauaacgugUGGCCgAg -3'
miRNA:   3'- -CGuuCGCGCACc-ACCGGG----------ACCGGgUg -5'
19067 5' -61.9 NC_004684.1 + 61181 0.66 0.393591
Target:  5'- gGUcGGCGgGguUGGUGGCCUcGGCgUACa -3'
miRNA:   3'- -CGuUCGCgC--ACCACCGGGaCCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 42853 0.66 0.384999
Target:  5'- aCGAGCGCgGUGG-GGCCaaccaGGCCgcCGCa -3'
miRNA:   3'- cGUUCGCG-CACCaCCGGga---CCGG--GUG- -5'
19067 5' -61.9 NC_004684.1 + 10208 0.66 0.384999
Target:  5'- aGCGAGCGCuggaGGUGccuGCCCaGGUgCGCg -3'
miRNA:   3'- -CGUUCGCGca--CCAC---CGGGaCCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 63867 0.66 0.384999
Target:  5'- ---uGCGCgGUGGcGGCCUucaucgGGCCCAg -3'
miRNA:   3'- cguuCGCG-CACCaCCGGGa-----CCGGGUg -5'
19067 5' -61.9 NC_004684.1 + 35635 0.66 0.384999
Target:  5'- ---cGCGCGUGGUGGCcgagucguuCCUGGaguCgACa -3'
miRNA:   3'- cguuCGCGCACCACCG---------GGACCg--GgUG- -5'
19067 5' -61.9 NC_004684.1 + 15235 0.66 0.382446
Target:  5'- aGUggGUGUuUGGUGGCgguuacgucgauggCCUGGCCaACa -3'
miRNA:   3'- -CGuuCGCGcACCACCG--------------GGACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 38827 0.67 0.376533
Target:  5'- gGCGGuGCccgacgGCcUGGUGGCCCUGGCgCUcaACa -3'
miRNA:   3'- -CGUU-CG------CGcACCACCGGGACCG-GG--UG- -5'
19067 5' -61.9 NC_004684.1 + 20213 0.67 0.368192
Target:  5'- ---cGCGCaGcGGcGGCCCUGGCCgcCGCu -3'
miRNA:   3'- cguuCGCG-CaCCaCCGGGACCGG--GUG- -5'
19067 5' -61.9 NC_004684.1 + 1625 0.67 0.368192
Target:  5'- cGCGcccaccGGCGCGcGGcGGCCaacGCCCGCg -3'
miRNA:   3'- -CGU------UCGCGCaCCaCCGGgacCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.