miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 16413 0.66 0.731074
Target:  5'- aCAUCUgccaggGGUCGgccuacgacguGCUGGCGCAC-ACCa -3'
miRNA:   3'- -GUAGGa-----CCGGC-----------UGACUGCGUGaUGGc -5'
19071 3' -56.4 NC_004684.1 + 23635 0.66 0.731074
Target:  5'- uGUCCcGGCCuuGCUGGCacCGCUGCUGa -3'
miRNA:   3'- gUAGGaCCGGc-UGACUGc-GUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 56680 0.66 0.731074
Target:  5'- --gCCUGGCgGuGCUGGCGCAgaaGCUGg -3'
miRNA:   3'- guaGGACCGgC-UGACUGCGUga-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 56355 0.66 0.710233
Target:  5'- gCGUCCUccaccacGCCGA-UGACGUaACUGCCGc -3'
miRNA:   3'- -GUAGGAc------CGGCUgACUGCG-UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 22112 0.66 0.710233
Target:  5'- -uUCCUguGGCCGGaaaccgGACGCAaggGCCGc -3'
miRNA:   3'- guAGGA--CCGGCUga----CUGCGUga-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 9710 0.66 0.710233
Target:  5'- cCAUgCCUGGCCGA-UGGC-CACcUGCUGu -3'
miRNA:   3'- -GUA-GGACCGGCUgACUGcGUG-AUGGC- -5'
19071 3' -56.4 NC_004684.1 + 23712 0.66 0.698641
Target:  5'- --aCCUGGgCGGC-GGCGCGCUcaacaucGCUGg -3'
miRNA:   3'- guaGGACCgGCUGaCUGCGUGA-------UGGC- -5'
19071 3' -56.4 NC_004684.1 + 22164 0.66 0.698641
Target:  5'- --gCCUGaccagcaccaagcGCCGcAUgGACGCGCUGCCGc -3'
miRNA:   3'- guaGGAC-------------CGGC-UGaCUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 36929 0.66 0.6891
Target:  5'- gGUCgaGGCCGGgUGgacACGC-CUGCUGg -3'
miRNA:   3'- gUAGgaCCGGCUgAC---UGCGuGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 36078 0.66 0.6891
Target:  5'- aCGUCCUGGCUGGuCUGccCGguC-ACCGa -3'
miRNA:   3'- -GUAGGACCGGCU-GACu-GCguGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 63181 0.66 0.6891
Target:  5'- --gCCgGGUCGACUcGACGCG--GCCGa -3'
miRNA:   3'- guaGGaCCGGCUGA-CUGCGUgaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 13460 0.67 0.667757
Target:  5'- --gCCUGGCCGACacggUGAcccCGCACcucGCCu -3'
miRNA:   3'- guaGGACCGGCUG----ACU---GCGUGa--UGGc -5'
19071 3' -56.4 NC_004684.1 + 37691 0.67 0.667757
Target:  5'- gGUUCUGGCCcacGACguUGACGCGCgcacGCgCGg -3'
miRNA:   3'- gUAGGACCGG---CUG--ACUGCGUGa---UG-GC- -5'
19071 3' -56.4 NC_004684.1 + 3076 0.67 0.661326
Target:  5'- --aCCUGGCgguguucaaccaccaCGACggccagGGCGCACUGCgCGc -3'
miRNA:   3'- guaGGACCG---------------GCUGa-----CUGCGUGAUG-GC- -5'
19071 3' -56.4 NC_004684.1 + 32751 0.67 0.661326
Target:  5'- aCGUCgC-GGCCGACcuggUGGCGUgagcaugaccgggugGCUGCCGg -3'
miRNA:   3'- -GUAG-GaCCGGCUG----ACUGCG---------------UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 41905 0.67 0.657033
Target:  5'- ---gCUGGCCGACcgGACGaCAUcgugGCCGu -3'
miRNA:   3'- guagGACCGGCUGa-CUGC-GUGa---UGGC- -5'
19071 3' -56.4 NC_004684.1 + 65615 0.67 0.657033
Target:  5'- gCGUCCUGGuuGGCguccagccACGCGCgcagcuCCGg -3'
miRNA:   3'- -GUAGGACCggCUGac------UGCGUGau----GGC- -5'
19071 3' -56.4 NC_004684.1 + 1375 0.67 0.645211
Target:  5'- aCAcCCUGGCCGACgccaaGGCcgccguuGCACUgGCCa -3'
miRNA:   3'- -GUaGGACCGGCUGa----CUG-------CGUGA-UGGc -5'
19071 3' -56.4 NC_004684.1 + 7701 0.67 0.635528
Target:  5'- -uUCCaGGCCGucGCcGugGCGCUgGCCGu -3'
miRNA:   3'- guAGGaCCGGC--UGaCugCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 17070 0.67 0.635528
Target:  5'- cCcgCCUGGCCG---GGCGCACcgACUGg -3'
miRNA:   3'- -GuaGGACCGGCugaCUGCGUGa-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.