Results 1 - 20 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19071 | 5' | -54.9 | NC_004684.1 | + | 19646 | 1.09 | 0.00138 |
Target: 5'- gUCCGGCCAACGCGCAACACAACCACAc -3' miRNA: 3'- -AGGCCGGUUGCGCGUUGUGUUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 13118 | 0.8 | 0.144144 |
Target: 5'- aCCGGCCAGCGCGgCAGCuucuCCACGc -3' miRNA: 3'- aGGCCGGUUGCGC-GUUGuguuGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 16480 | 0.79 | 0.1744 |
Target: 5'- gUCCGGCC-ACGUGCAGCuggcCAugCACGa -3' miRNA: 3'- -AGGCCGGuUGCGCGUUGu---GUugGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 66096 | 0.79 | 0.160358 |
Target: 5'- gUCCGGCCAcgcgucGCGCGCGuaccggaACAUGGCCACc -3' miRNA: 3'- -AGGCCGGU------UGCGCGU-------UGUGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 11451 | 0.79 | 0.152263 |
Target: 5'- aCCgGGCCGACGCGCAcCACggUCACc -3' miRNA: 3'- aGG-CCGGUUGCGCGUuGUGuuGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 15144 | 0.78 | 0.179159 |
Target: 5'- aUCCacGCCAGCGCGCAGCugGccGCCGCc -3' miRNA: 3'- -AGGc-CGGUUGCGCGUUGugU--UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 43238 | 0.77 | 0.215789 |
Target: 5'- uUCUcGCCAGCGCGCGggccggagaGCACGGCCAUg -3' miRNA: 3'- -AGGcCGGUUGCGCGU---------UGUGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 2527 | 0.77 | 0.221517 |
Target: 5'- aCCGGaCAACGCGCAcCACcccACCACAa -3' miRNA: 3'- aGGCCgGUUGCGCGUuGUGu--UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 59895 | 0.77 | 0.210188 |
Target: 5'- -gCGGCCAGCGCGUAG-ACAACCAg- -3' miRNA: 3'- agGCCGGUUGCGCGUUgUGUUGGUgu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 57375 | 0.77 | 0.221517 |
Target: 5'- cCCGGUCGGCGCGCGGCAgGuCCgGCAg -3' miRNA: 3'- aGGCCGGUUGCGCGUUGUgUuGG-UGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 63687 | 0.77 | 0.226193 |
Target: 5'- aCCGGCCAGCGCGgCGGCGCuggcgaucuccuGCCAg- -3' miRNA: 3'- aGGCCGGUUGCGC-GUUGUGu-----------UGGUgu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 63256 | 0.77 | 0.221517 |
Target: 5'- gUCCGcGCCGAUGCGCucCugGACCugGa -3' miRNA: 3'- -AGGC-CGGUUGCGCGuuGugUUGGugU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 4725 | 0.77 | 0.204712 |
Target: 5'- -aCGGCCAGgaccuCGCGCAcggcCACAGCCGCAa -3' miRNA: 3'- agGCCGGUU-----GCGCGUu---GUGUUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 10586 | 0.77 | 0.233363 |
Target: 5'- aUCCGGCUgguucGGCGCGCGagguGCGCAACUGCc -3' miRNA: 3'- -AGGCCGG-----UUGCGCGU----UGUGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 15826 | 0.77 | 0.221517 |
Target: 5'- cCCGGUgG-CGCGCGGCAUcGCCACAc -3' miRNA: 3'- aGGCCGgUuGCGCGUUGUGuUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 37248 | 0.76 | 0.245738 |
Target: 5'- aCUGGCCGACGCGCAcacuGCGCGguGCCu-- -3' miRNA: 3'- aGGCCGGUUGCGCGU----UGUGU--UGGugu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 16203 | 0.76 | 0.258651 |
Target: 5'- -aCGGCCAggGCGCGCGguccauggcccgGCGCAucgGCCACAc -3' miRNA: 3'- agGCCGGU--UGCGCGU------------UGUGU---UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 1289 | 0.76 | 0.265313 |
Target: 5'- uUCCGGUacGCGCGCGACGCGugGCCGg- -3' miRNA: 3'- -AGGCCGguUGCGCGUUGUGU--UGGUgu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 52907 | 0.76 | 0.239484 |
Target: 5'- gUCCGGCCAGCaCgGCGGCGUGGCCGCAu -3' miRNA: 3'- -AGGCCGGUUGcG-CGUUGUGUUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 9423 | 0.76 | 0.265313 |
Target: 5'- cUCGGCCAgcaGCGUGCGcAC-CAGCCGCAg -3' miRNA: 3'- aGGCCGGU---UGCGCGU-UGuGUUGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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