miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 67024 0.69 0.60377
Target:  5'- cUCGGCCAGguCGCGCAugGCcAUCAgGg -3'
miRNA:   3'- aGGCCGGUU--GCGCGUugUGuUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 66944 0.7 0.538041
Target:  5'- -aCGGCCAcgauGCGCGCAGCGguguccuCGuCCACGu -3'
miRNA:   3'- agGCCGGU----UGCGCGUUGU-------GUuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 66903 0.73 0.382129
Target:  5'- -gCGGCCuuCgGCGCGGCcuugGCGGCCACAa -3'
miRNA:   3'- agGCCGGuuG-CGCGUUG----UGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 66096 0.79 0.160358
Target:  5'- gUCCGGCCAcgcgucGCGCGCGuaccggaACAUGGCCACc -3'
miRNA:   3'- -AGGCCGGU------UGCGCGU-------UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 65882 0.66 0.794132
Target:  5'- gCCGuugaGCgCGGCGCGCAGguUGGCCACc -3'
miRNA:   3'- aGGC----CG-GUUGCGCGUUguGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 65778 0.73 0.356227
Target:  5'- gCCGGUgGGCGCGCG-CACGGCgACc -3'
miRNA:   3'- aGGCCGgUUGCGCGUuGUGUUGgUGu -5'
19071 5' -54.9 NC_004684.1 + 65629 0.67 0.733508
Target:  5'- gUCCaGCCAcGCGCGCAGCuccgguccCGACCuACc -3'
miRNA:   3'- -AGGcCGGU-UGCGCGUUGu-------GUUGG-UGu -5'
19071 5' -54.9 NC_004684.1 + 65434 0.72 0.409254
Target:  5'- gCUGcGCUGGCGUGCGgcGCGCGGCCACc -3'
miRNA:   3'- aGGC-CGGUUGCGCGU--UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 65326 0.7 0.528529
Target:  5'- -aCGGCCAGCGCcagGCAGgcCACGAUgGCGg -3'
miRNA:   3'- agGCCGGUUGCG---CGUU--GUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 64830 0.67 0.713442
Target:  5'- aCCGGCCucggcgaaggccuccGCGCGCuccacGCAgGugCGCAg -3'
miRNA:   3'- aGGCCGGu--------------UGCGCGu----UGUgUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 64640 0.68 0.668182
Target:  5'- gUCGGCguCGugGCGCAccgcgaugucggcGCGCAGCgGCAc -3'
miRNA:   3'- aGGCCG--GUugCGCGU-------------UGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 64504 0.66 0.784381
Target:  5'- gUCGGCgAACGUGUuGCGCA-CCAgCAg -3'
miRNA:   3'- aGGCCGgUUGCGCGuUGUGUuGGU-GU- -5'
19071 5' -54.9 NC_004684.1 + 64241 0.67 0.722987
Target:  5'- cUCGGCCAG-GCGCuggguguuGGCGCAcACCACc -3'
miRNA:   3'- aGGCCGGUUgCGCG--------UUGUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 63824 0.67 0.690935
Target:  5'- cCCcGCUGugGCGCAcCACGACCuuCAg -3'
miRNA:   3'- aGGcCGGUugCGCGUuGUGUUGGu-GU- -5'
19071 5' -54.9 NC_004684.1 + 63687 0.77 0.226193
Target:  5'- aCCGGCCAGCGCGgCGGCGCuggcgaucuccuGCCAg- -3'
miRNA:   3'- aGGCCGGUUGCGC-GUUGUGu-----------UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 63582 0.69 0.625606
Target:  5'- aUCGGCC--UGCGCGGCGCGgcggugguuACCGCc -3'
miRNA:   3'- aGGCCGGuuGCGCGUUGUGU---------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 63374 0.73 0.364722
Target:  5'- -gCGGCCGACGCGCcAGC-CGAUgGCGg -3'
miRNA:   3'- agGCCGGUUGCGCG-UUGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 63256 0.77 0.221517
Target:  5'- gUCCGcGCCGAUGCGCucCugGACCugGa -3'
miRNA:   3'- -AGGC-CGGUUGCGCGuuGugUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 63156 0.71 0.466933
Target:  5'- -gCGGCUccuGCGCGCcGCGCAGgCGCAu -3'
miRNA:   3'- agGCCGGu--UGCGCGuUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 62995 0.71 0.476952
Target:  5'- gCCGGUggccgggaacgCGAUGCGCAGgAUGACCGCGc -3'
miRNA:   3'- aGGCCG-----------GUUGCGCGUUgUGUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.