miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 16490 1.09 0.000576
Target:  5'- gUGCAGCUGGCCAUGCACGACGAGCUGg -3'
miRNA:   3'- -ACGUCGACCGGUACGUGCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 67282 0.69 0.39057
Target:  5'- gGguGCaGGUguUGCGCcgGGCGAGCUGc -3'
miRNA:   3'- aCguCGaCCGguACGUG--CUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 14928 0.69 0.408642
Target:  5'- gGUGGC-GGCCAUGC-CGuCGGGCa- -3'
miRNA:   3'- aCGUCGaCCGGUACGuGCuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 55713 0.66 0.601574
Target:  5'- cGCAGCU-GCU-UGCGCGGCGGucacGUUGg -3'
miRNA:   3'- aCGUCGAcCGGuACGUGCUGCU----CGAC- -5'
19076 5' -57.9 NC_004684.1 + 62657 0.78 0.113218
Target:  5'- uUGCGGCugUGGCCGUGCGCGAgGucCUGg -3'
miRNA:   3'- -ACGUCG--ACCGGUACGUGCUgCucGAC- -5'
19076 5' -57.9 NC_004684.1 + 64912 0.75 0.170596
Target:  5'- aGCAGCUccaGGUCAggugguacgGCACGcCGAGCUGg -3'
miRNA:   3'- aCGUCGA---CCGGUa--------CGUGCuGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 4834 0.72 0.252618
Target:  5'- -cCGGCcgacaaGGCCAaGCugGACGAGCUGc -3'
miRNA:   3'- acGUCGa-----CCGGUaCGugCUGCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 15588 0.72 0.27249
Target:  5'- cGCGGcCUGGCCGUGgaccgggacuacCugGACGAGUa- -3'
miRNA:   3'- aCGUC-GACCGGUAC------------GugCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 11379 0.71 0.308365
Target:  5'- aGCAGCgUGGUgGUGCGCGACuuGCc- -3'
miRNA:   3'- aCGUCG-ACCGgUACGUGCUGcuCGac -5'
19076 5' -57.9 NC_004684.1 + 61478 0.69 0.381731
Target:  5'- cGCGGCcagccGGUCGUGCGCGAUcAGCg- -3'
miRNA:   3'- aCGUCGa----CCGGUACGUGCUGcUCGac -5'
19076 5' -57.9 NC_004684.1 + 18310 0.7 0.356029
Target:  5'- cUGcCGGUUGGCggcgaCGUGgGCGACGAGCa- -3'
miRNA:   3'- -AC-GUCGACCG-----GUACgUGCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 57248 0.72 0.286423
Target:  5'- gGCGGCUGGCUGaGCACGAgGucAGCg- -3'
miRNA:   3'- aCGUCGACCGGUaCGUGCUgC--UCGac -5'
19076 5' -57.9 NC_004684.1 + 51650 0.82 0.051238
Target:  5'- aGCuGCUGGCCGUGCACGAgGcccuuGCUGg -3'
miRNA:   3'- aCGuCGACCGGUACGUGCUgCu----CGAC- -5'
19076 5' -57.9 NC_004684.1 + 10094 0.7 0.36787
Target:  5'- gGCagGGCUGGCCGggGUGCGGCucgccgucacaggccGAGCUGu -3'
miRNA:   3'- aCG--UCGACCGGUa-CGUGCUG---------------CUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 30201 0.8 0.080872
Target:  5'- aGCAGCUGGCCGcGCGCGuCGAuGCUc -3'
miRNA:   3'- aCGUCGACCGGUaCGUGCuGCU-CGAc -5'
19076 5' -57.9 NC_004684.1 + 783 0.72 0.279387
Target:  5'- gGCaccaAGCUGGCCAagaaccaggucgUGCGCGACG-GCa- -3'
miRNA:   3'- aCG----UCGACCGGU------------ACGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 54284 0.69 0.381731
Target:  5'- cGC-GCUGGCCGgugGgGCGGCGuGCa- -3'
miRNA:   3'- aCGuCGACCGGUa--CgUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 62688 0.69 0.39057
Target:  5'- cGUAGCaGGCCAgaaugaUGCGCGcguuCGGGUUGa -3'
miRNA:   3'- aCGUCGaCCGGU------ACGUGCu---GCUCGAC- -5'
19076 5' -57.9 NC_004684.1 + 23407 0.78 0.104146
Target:  5'- cGCAGCUGGCCggGUACGcccGCGcacGGCUGa -3'
miRNA:   3'- aCGUCGACCGGuaCGUGC---UGC---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 30079 0.73 0.222165
Target:  5'- gGUAGgcaaUGGCCAUGCugGACGcGCUc -3'
miRNA:   3'- aCGUCg---ACCGGUACGugCUGCuCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.