miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 45110 0.66 0.661506
Target:  5'- cGCCGCGC-GGGCcUUGGccGCCgccagGCg -3'
miRNA:   3'- aCGGUGCGuUCUGuGACCucCGGa----CG- -5'
19079 3' -57.2 NC_004684.1 + 37320 0.66 0.661506
Target:  5'- cGUCG-GUGAGugGCcgGGAGGCCgGUa -3'
miRNA:   3'- aCGGUgCGUUCugUGa-CCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 17788 0.66 0.660427
Target:  5'- gGCCAgcCGCAAcGACGCcugcgggUGuGAGGUCUGg -3'
miRNA:   3'- aCGGU--GCGUU-CUGUG-------AC-CUCCGGACg -5'
19079 3' -57.2 NC_004684.1 + 40408 0.66 0.650699
Target:  5'- cGCCGCGCucgcaccGGC-CUGGAuGGCg-GCg -3'
miRNA:   3'- aCGGUGCGuu-----CUGuGACCU-CCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 62163 0.66 0.650699
Target:  5'- gGCCGCGCGcGGACACcau-GGCCUc- -3'
miRNA:   3'- aCGGUGCGU-UCUGUGaccuCCGGAcg -5'
19079 3' -57.2 NC_004684.1 + 5672 0.66 0.650699
Target:  5'- aGCCGugguCGgAGGugGCcgGGGcccGGCCUGCc -3'
miRNA:   3'- aCGGU----GCgUUCugUGa-CCU---CCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 30262 0.66 0.650699
Target:  5'- gGCgGCGCAGuGCGCUGGcGGCaC-GCc -3'
miRNA:   3'- aCGgUGCGUUcUGUGACCuCCG-GaCG- -5'
19079 3' -57.2 NC_004684.1 + 7920 0.66 0.650699
Target:  5'- gGCCGCGCAGGugG-UGGAcaucGCC-GCc -3'
miRNA:   3'- aCGGUGCGUUCugUgACCUc---CGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 59132 0.66 0.646371
Target:  5'- cGCgGCGCAcguggcgGGACugcauguugucggcGCUGGu-GCCUGCg -3'
miRNA:   3'- aCGgUGCGU-------UCUG--------------UGACCucCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 65405 0.66 0.644206
Target:  5'- cUGCCagaacgcgaguucgcGCGCcAGGCGCUGcgcuGGCgUGCg -3'
miRNA:   3'- -ACGG---------------UGCGuUCUGUGACcu--CCGgACG- -5'
19079 3' -57.2 NC_004684.1 + 37431 0.66 0.639875
Target:  5'- cGCCACGguGGugGCaccGGAGGUg--- -3'
miRNA:   3'- aCGGUGCguUCugUGa--CCUCCGgacg -5'
19079 3' -57.2 NC_004684.1 + 54897 0.66 0.639875
Target:  5'- gUGCgGCaCGAGGCGgccCUGGuGGCCgaGCg -3'
miRNA:   3'- -ACGgUGcGUUCUGU---GACCuCCGGa-CG- -5'
19079 3' -57.2 NC_004684.1 + 65813 0.66 0.639875
Target:  5'- -aCCGgGCAGGugACccGGAGGCaccgGCg -3'
miRNA:   3'- acGGUgCGUUCugUGa-CCUCCGga--CG- -5'
19079 3' -57.2 NC_004684.1 + 25015 0.66 0.639875
Target:  5'- cGCUcaGCGCcGGugcaGCUGGAGGCg-GCa -3'
miRNA:   3'- aCGG--UGCGuUCug--UGACCUCCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 57199 0.66 0.639875
Target:  5'- cGCU-CGCu-GGCGCUGGGcGGUCUGg -3'
miRNA:   3'- aCGGuGCGuuCUGUGACCU-CCGGACg -5'
19079 3' -57.2 NC_004684.1 + 28180 0.66 0.629045
Target:  5'- gUGCaaccuGCGCGAGGCGCacgUGGAcagcaccgccaGCCUGCg -3'
miRNA:   3'- -ACGg----UGCGUUCUGUG---ACCUc----------CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 13258 0.66 0.629045
Target:  5'- gGCCGugacCGCcAGcGCGCUGGuGGCC-GCc -3'
miRNA:   3'- aCGGU----GCGuUC-UGUGACCuCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 51821 0.66 0.629045
Target:  5'- gGCCGCGCGcGcuGCGCUGGAGcaucaCCcagUGCg -3'
miRNA:   3'- aCGGUGCGUuC--UGUGACCUCc----GG---ACG- -5'
19079 3' -57.2 NC_004684.1 + 2668 0.66 0.629045
Target:  5'- gGCCACaagauGGACccgaUGGAGGCCcugGCg -3'
miRNA:   3'- aCGGUGcgu--UCUGug--ACCUCCGGa--CG- -5'
19079 3' -57.2 NC_004684.1 + 65334 0.66 0.629045
Target:  5'- cGCCAgGCAGGcCACgaUGGcGGCCcccaggGCc -3'
miRNA:   3'- aCGGUgCGUUCuGUG--ACCuCCGGa-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.