miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 66364 0.66 0.437142
Target:  5'- uUCUG-GCcccacGCCGCG-AGCUGCGCgGUGGa -3'
miRNA:   3'- -GGACgCG-----UGGCGCgUCGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 41251 0.66 0.437142
Target:  5'- aUCUGCGCgGCCaGCGagguGCUG-GUGCGGu -3'
miRNA:   3'- -GGACGCG-UGG-CGCgu--CGACgCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 52398 0.66 0.437142
Target:  5'- aCCUGCucGCGCagGCGCAGguuCUGCGUugcacgcaaGCGGa -3'
miRNA:   3'- -GGACG--CGUGg-CGCGUC---GACGCG---------CGCU- -5'
19080 3' -62.2 NC_004684.1 + 3076 0.66 0.437142
Target:  5'- aCCUgGCGguguucaacCACCacgacggccaggGCGCA-CUGCGCGCGGu -3'
miRNA:   3'- -GGA-CGC---------GUGG------------CGCGUcGACGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 10568 0.66 0.437141
Target:  5'- cCCUgGCGUuccCCGCcgaucCGGCUgguucgGCGCGCGAg -3'
miRNA:   3'- -GGA-CGCGu--GGCGc----GUCGA------CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 5886 0.66 0.436229
Target:  5'- aCUGCuggcgcgcaucgaGCGCCGC-CGcCUGCGCgGCGAc -3'
miRNA:   3'- gGACG-------------CGUGGCGcGUcGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 3276 0.66 0.431681
Target:  5'- aCCaUGCGCACCgaguucgaggccaugGCaCAGCgcgaGCGCGaCGAc -3'
miRNA:   3'- -GG-ACGCGUGG---------------CGcGUCGa---CGCGC-GCU- -5'
19080 3' -62.2 NC_004684.1 + 14995 0.66 0.428062
Target:  5'- aCCUGCGC-CUGCGCgAGCagGUcauggucgaGCGgGAg -3'
miRNA:   3'- -GGACGCGuGGCGCG-UCGa-CG---------CGCgCU- -5'
19080 3' -62.2 NC_004684.1 + 17398 0.66 0.428062
Target:  5'- aCCgGUGCAUuugaCGaUGCGGC-GCGCGUGAa -3'
miRNA:   3'- -GGaCGCGUG----GC-GCGUCGaCGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 12201 0.66 0.428062
Target:  5'- uCCaGCGcCGCCGC-CAGCgGUGCGUu- -3'
miRNA:   3'- -GGaCGC-GUGGCGcGUCGaCGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 7854 0.66 0.428062
Target:  5'- --cGCGCGCUggcgGUGCAGgacCUGUGCGCa- -3'
miRNA:   3'- ggaCGCGUGG----CGCGUC---GACGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 7949 0.66 0.422668
Target:  5'- aCCgGCGCacaccggugggcaagGCCGCcagGCGGCcGUGCGCa- -3'
miRNA:   3'- -GGaCGCG---------------UGGCG---CGUCGaCGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 47188 0.66 0.419095
Target:  5'- gCC-GC-CGCUGCGCGGCgaacgGUGCgGCGGu -3'
miRNA:   3'- -GGaCGcGUGGCGCGUCGa----CGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 38956 0.66 0.419095
Target:  5'- aCCgGCaccaaGCACCGCaccgaGguGUUcGCGCGCGGg -3'
miRNA:   3'- -GGaCG-----CGUGGCG-----CguCGA-CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 57521 0.66 0.419095
Target:  5'- uCCUGCGCGgCGUcgggauccggcgGCAGCUcaccgGCG-GCGGu -3'
miRNA:   3'- -GGACGCGUgGCG------------CGUCGA-----CGCgCGCU- -5'
19080 3' -62.2 NC_004684.1 + 63678 0.66 0.419095
Target:  5'- --aGCGUugauaccgGCCaGCGCGGCgGCGCugGCGAu -3'
miRNA:   3'- ggaCGCG--------UGG-CGCGUCGaCGCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 67054 0.66 0.419095
Target:  5'- gCUGCGCACgcuuCGCGCcGUacccggUGCGgGCGu -3'
miRNA:   3'- gGACGCGUG----GCGCGuCG------ACGCgCGCu -5'
19080 3' -62.2 NC_004684.1 + 7042 0.66 0.419095
Target:  5'- aCCUG-GCACCGC-UGGCcgaaCGCGCGGu -3'
miRNA:   3'- -GGACgCGUGGCGcGUCGac--GCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 49878 0.66 0.419095
Target:  5'- uCCgGCgugGCACCGCGCucgcgAGCUGCGUa--- -3'
miRNA:   3'- -GGaCG---CGUGGCGCG-----UCGACGCGcgcu -5'
19080 3' -62.2 NC_004684.1 + 19925 0.66 0.41377
Target:  5'- uCCgUGC-CGCCGCugGUAGCgacuaccucagcgaGCGCGCGAc -3'
miRNA:   3'- -GG-ACGcGUGGCG--CGUCGa-------------CGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.