miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 3' -62.2 NC_004684.1 + 67054 0.66 0.419095
Target:  5'- gCUGCGCACgcuuCGCGCcGUacccggUGCGgGCGu -3'
miRNA:   3'- gGACGCGUG----GCGCGuCG------ACGCgCGCu -5'
19080 3' -62.2 NC_004684.1 + 66364 0.66 0.437142
Target:  5'- uUCUG-GCcccacGCCGCG-AGCUGCGCgGUGGa -3'
miRNA:   3'- -GGACgCG-----UGGCGCgUCGACGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 65753 0.67 0.376025
Target:  5'- gCCUcGCGggcguuggcCGCCGCGCgccGGUggGCGCGCGc -3'
miRNA:   3'- -GGA-CGC---------GUGGCGCG---UCGa-CGCGCGCu -5'
19080 3' -62.2 NC_004684.1 + 65708 0.67 0.367776
Target:  5'- -aUGCGCGCCaGCuCGGCcugGUGgGCGAa -3'
miRNA:   3'- ggACGCGUGG-CGcGUCGa--CGCgCGCU- -5'
19080 3' -62.2 NC_004684.1 + 65422 0.73 0.152871
Target:  5'- --cGCGCGCCagGCGCuGCgcugGCGUGCGGc -3'
miRNA:   3'- ggaCGCGUGG--CGCGuCGa---CGCGCGCU- -5'
19080 3' -62.2 NC_004684.1 + 65305 0.67 0.367777
Target:  5'- gCUGCGcCACCaguuGCG-AGCUgGCGCGCu- -3'
miRNA:   3'- gGACGC-GUGG----CGCgUCGA-CGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 64846 0.68 0.32843
Target:  5'- gCCUccGCGCGCUccaCGCAGgUGCGCaGCGu -3'
miRNA:   3'- -GGA--CGCGUGGc--GCGUCgACGCG-CGCu -5'
19080 3' -62.2 NC_004684.1 + 64651 0.71 0.212969
Target:  5'- --gGCGCACCGCGauguCGGC-GCGCaGCGGc -3'
miRNA:   3'- ggaCGCGUGGCGC----GUCGaCGCG-CGCU- -5'
19080 3' -62.2 NC_004684.1 + 63678 0.66 0.419095
Target:  5'- --aGCGUugauaccgGCCaGCGCGGCgGCGCugGCGAu -3'
miRNA:   3'- ggaCGCG--------UGG-CGCGUCGaCGCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 63525 0.75 0.105712
Target:  5'- cCUUG-GCACUGCGCAGCgGCGUGCc- -3'
miRNA:   3'- -GGACgCGUGGCGCGUCGaCGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 63504 0.68 0.29715
Target:  5'- gCCUGCGCcagcagggcggccuGgCGuCGCAGCUcGCGgGCGu -3'
miRNA:   3'- -GGACGCG--------------UgGC-GCGUCGA-CGCgCGCu -5'
19080 3' -62.2 NC_004684.1 + 63361 0.71 0.207703
Target:  5'- cCCaGCGCACCGaGCGGCcGaCGCGCc- -3'
miRNA:   3'- -GGaCGCGUGGCgCGUCGaC-GCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 63161 0.78 0.059879
Target:  5'- uCCUGCGCGCCGCGCAGgcgcaUGCaGuCGUGGc -3'
miRNA:   3'- -GGACGCGUGGCGCGUCg----ACG-C-GCGCU- -5'
19080 3' -62.2 NC_004684.1 + 62935 0.69 0.278054
Target:  5'- gCCUcGCGCGCaCGUGCggccuccAGCUGCGCcaGCa- -3'
miRNA:   3'- -GGA-CGCGUG-GCGCG-------UCGACGCG--CGcu -5'
19080 3' -62.2 NC_004684.1 + 62412 0.67 0.343786
Target:  5'- cCCUcGCGCugCGCcCAGgUGCGCagucCGAa -3'
miRNA:   3'- -GGA-CGCGugGCGcGUCgACGCGc---GCU- -5'
19080 3' -62.2 NC_004684.1 + 62089 0.69 0.278719
Target:  5'- gCCaGCGCGUCGuCGUAGCUGgCGCugGCGAa -3'
miRNA:   3'- -GGaCGCGUGGC-GCGUCGAC-GCG--CGCU- -5'
19080 3' -62.2 NC_004684.1 + 61605 0.68 0.292283
Target:  5'- aCCUcGCaCGCCugGCGCAGUaGCGCGCu- -3'
miRNA:   3'- -GGA-CGcGUGG--CGCGUCGaCGCGCGcu -5'
19080 3' -62.2 NC_004684.1 + 61570 0.68 0.292282
Target:  5'- --gGCaGCACuCGCGCAGCUGgGaCGCc- -3'
miRNA:   3'- ggaCG-CGUG-GCGCGUCGACgC-GCGcu -5'
19080 3' -62.2 NC_004684.1 + 61333 0.67 0.376025
Target:  5'- aCCaGCGCGgCGUGguugguCAGCUGgGcCGCGAg -3'
miRNA:   3'- -GGaCGCGUgGCGC------GUCGACgC-GCGCU- -5'
19080 3' -62.2 NC_004684.1 + 59988 0.66 0.401508
Target:  5'- gCCaGCGCcggaACCGCaGCAGC-GgGCGCa- -3'
miRNA:   3'- -GGaCGCG----UGGCG-CGUCGaCgCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.