miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 25965 0.66 0.852654
Target:  5'- aGCUGGcCAAGCUGGUGcgCgaagGCAACc -3'
miRNA:   3'- aCGGUC-GUUCGACCACaaGg---UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 31164 0.66 0.852654
Target:  5'- cGCCAGCGgucucGGC-GGUGg-CCACGcuGCGc -3'
miRNA:   3'- aCGGUCGU-----UCGaCCACaaGGUGU--UGC- -5'
19080 5' -53.2 NC_004684.1 + 43830 0.66 0.84398
Target:  5'- gGcCCGGCAGGCUGuccaggCCGCGACc -3'
miRNA:   3'- aC-GGUCGUUCGACcacaa-GGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 36935 0.66 0.835078
Target:  5'- gGCCGGguGgacacgccuGCUGGUGgUCaACGACGg -3'
miRNA:   3'- aCGGUCguU---------CGACCACaAGgUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 36683 0.66 0.835078
Target:  5'- cGCCAGCAucGUUGGcGUgcCCAcCGGCGu -3'
miRNA:   3'- aCGGUCGUu-CGACCaCAa-GGU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 4405 0.66 0.835078
Target:  5'- cGCCAGCAAGUccUGGccg-CCggaACAACGc -3'
miRNA:   3'- aCGGUCGUUCG--ACCacaaGG---UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 2285 0.66 0.835078
Target:  5'- cGCCAGC---CUGGg---CCACGACGc -3'
miRNA:   3'- aCGGUCGuucGACCacaaGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 33707 0.66 0.835078
Target:  5'- cGCCAGCGgcAGCggcGGUGgcCCgaacuacucgacGCAGCGc -3'
miRNA:   3'- aCGGUCGU--UCGa--CCACaaGG------------UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 57384 0.66 0.825956
Target:  5'- cGCgCGGCAGGUccGGcaGUUCCgGCAACGg -3'
miRNA:   3'- aCG-GUCGUUCGa-CCa-CAAGG-UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 10204 0.66 0.825956
Target:  5'- cGCCAGCGAGCgcuggaGGUGccugCCcaggugcgcgaGCAGCu -3'
miRNA:   3'- aCGGUCGUUCGa-----CCACaa--GG-----------UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 20893 0.66 0.823178
Target:  5'- -aUCGGCAAGCUGGccuccaacgccuaCCGCAGCGg -3'
miRNA:   3'- acGGUCGUUCGACCacaa---------GGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 65095 0.66 0.816625
Target:  5'- aUGCCGuCGAGCagGGUGgcgucgUCCGCGuCGa -3'
miRNA:   3'- -ACGGUcGUUCGa-CCACa-----AGGUGUuGC- -5'
19080 5' -53.2 NC_004684.1 + 62456 0.66 0.816625
Target:  5'- cUGCCAGCGcuccGGgaGGUGgccgUUgGCGACc -3'
miRNA:   3'- -ACGGUCGU----UCgaCCACa---AGgUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 6471 0.66 0.816625
Target:  5'- aUGaCCAGCuGGGCggcggUGGUGUUCgACAuCGg -3'
miRNA:   3'- -AC-GGUCG-UUCG-----ACCACAAGgUGUuGC- -5'
19080 5' -53.2 NC_004684.1 + 24585 0.67 0.807094
Target:  5'- gGCCAGCGAGUUGGgaucaaGgcCCugGAgGc -3'
miRNA:   3'- aCGGUCGUUCGACCa-----CaaGGugUUgC- -5'
19080 5' -53.2 NC_004684.1 + 31880 0.67 0.807094
Target:  5'- cGCCGaCGuGCUGGUGgacgCCGgGACGu -3'
miRNA:   3'- aCGGUcGUuCGACCACaa--GGUgUUGC- -5'
19080 5' -53.2 NC_004684.1 + 65713 0.67 0.805166
Target:  5'- cGCCAGCucGGcCUGGUGggcgaaaaacgCCACGAa- -3'
miRNA:   3'- aCGGUCGu-UC-GACCACaa---------GGUGUUgc -5'
19080 5' -53.2 NC_004684.1 + 30957 0.67 0.797376
Target:  5'- cGCCAGCAGGgUcGUcgUCCACcACGa -3'
miRNA:   3'- aCGGUCGUUCgAcCAcaAGGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 35365 0.67 0.797376
Target:  5'- gUGCCAGCu-GUgGGcGUUCcCGCAACa -3'
miRNA:   3'- -ACGGUCGuuCGaCCaCAAG-GUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 29480 0.67 0.797376
Target:  5'- cGaCCAGC-AGCUGGUGgaaCAgGACu -3'
miRNA:   3'- aC-GGUCGuUCGACCACaagGUgUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.