miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 14672 1.11 0.000293
Target:  5'- gACAGCGCCUACGAGCGUGGCGAGGCCg -3'
miRNA:   3'- -UGUCGCGGAUGCUCGCACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 26722 0.69 0.336141
Target:  5'- cACcuUGCUggcCGAGCGcgacUGGCGGGGCCa -3'
miRNA:   3'- -UGucGCGGau-GCUCGC----ACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 9018 0.69 0.349567
Target:  5'- cGCGGUGCCgUGCgGGGCGgcaaccGGCGcggcaacgccagcaGGGCCa -3'
miRNA:   3'- -UGUCGCGG-AUG-CUCGCa-----CCGC--------------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 25575 0.66 0.53657
Target:  5'- cCAGCGCCUccgggugguccACGAagaacgucgGCGUcGGCaccuGGCCg -3'
miRNA:   3'- uGUCGCGGA-----------UGCU---------CGCA-CCGcu--CCGG- -5'
19083 3' -60.1 NC_004684.1 + 17798 0.76 0.126881
Target:  5'- aACGaCGCCUGCGGGUGUgaggucuggaccgcaGGCGAaGGCCa -3'
miRNA:   3'- -UGUcGCGGAUGCUCGCA---------------CCGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 31258 0.75 0.14724
Target:  5'- cACuGCGCCcccACaGGUGUGGCGAaGGCCa -3'
miRNA:   3'- -UGuCGCGGa--UGcUCGCACCGCU-CCGG- -5'
19083 3' -60.1 NC_004684.1 + 12162 0.71 0.252163
Target:  5'- cGCAGCGCCUugGcGCGcGGUGccaacgccucguAGGCa -3'
miRNA:   3'- -UGUCGCGGAugCuCGCaCCGC------------UCCGg -5'
19083 3' -60.1 NC_004684.1 + 526 0.71 0.264859
Target:  5'- cCGGCGCUgACGugcuggccAGCGcGGuCGAGGCCg -3'
miRNA:   3'- uGUCGCGGaUGC--------UCGCaCC-GCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 64870 0.7 0.306051
Target:  5'- cGCAGCGuCCgcagugcCGGGCGUcGuuGAGGCCg -3'
miRNA:   3'- -UGUCGC-GGau-----GCUCGCA-CcgCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 23256 0.69 0.336141
Target:  5'- -gAGCGCCUggugcucaACGAcGCG-GGCGAGGa- -3'
miRNA:   3'- ugUCGCGGA--------UGCU-CGCaCCGCUCCgg -5'
19083 3' -60.1 NC_004684.1 + 34018 0.7 0.313376
Target:  5'- -uGGuCGCCgucaacgGCGGGaaacCGaUGGCGAGGCCg -3'
miRNA:   3'- ugUC-GCGGa------UGCUC----GC-ACCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 62485 0.7 0.306051
Target:  5'- gAUGGUGCCgcCGAGgccgGUGGCGAccaGGCCg -3'
miRNA:   3'- -UGUCGCGGauGCUCg---CACCGCU---CCGG- -5'
19083 3' -60.1 NC_004684.1 + 7635 0.76 0.115824
Target:  5'- cCAGCucGCCgugGCGGGCGUGGUGAccgggucggcGGCCu -3'
miRNA:   3'- uGUCG--CGGa--UGCUCGCACCGCU----------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 54525 0.7 0.313376
Target:  5'- gGCGGCgGCCU-CG-GCgGUGGCGGccucGGCCu -3'
miRNA:   3'- -UGUCG-CGGAuGCuCG-CACCGCU----CCGG- -5'
19083 3' -60.1 NC_004684.1 + 54778 0.76 0.11866
Target:  5'- cCGGUGCCcgcaaggUGCGcGGCGUGGCG-GGCCu -3'
miRNA:   3'- uGUCGCGG-------AUGC-UCGCACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 44957 0.71 0.264859
Target:  5'- cGCcGCGCCgACG-GCGaUGGCguuGAGGCCc -3'
miRNA:   3'- -UGuCGCGGaUGCuCGC-ACCG---CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 8506 0.69 0.328421
Target:  5'- gACGGUGCCgUGCuGGGauuGUGGCGugcugugcGGGCCg -3'
miRNA:   3'- -UGUCGCGG-AUG-CUCg--CACCGC--------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 7880 0.69 0.343993
Target:  5'- cGCAG-GCCUACGAcGCGcccGGUgcuccguuGGGGCCg -3'
miRNA:   3'- -UGUCgCGGAUGCU-CGCa--CCG--------CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 24994 0.76 0.125531
Target:  5'- uCGGCGCgUugGGGUc-GGCGGGGCCg -3'
miRNA:   3'- uGUCGCGgAugCUCGcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 10222 0.72 0.222613
Target:  5'- --uGCGCC--CGAGCGUGcGCGucGGCCa -3'
miRNA:   3'- uguCGCGGauGCUCGCAC-CGCu-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.