miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 5' -59.5 NC_004684.1 + 12807 0.66 0.556993
Target:  5'- cCCGCCgACGAcGcGcCCGAGGAcGGCGg-- -3'
miRNA:   3'- -GGCGG-UGCUuC-C-GGCUCCU-CCGUguu -5'
19088 5' -59.5 NC_004684.1 + 6224 0.66 0.556993
Target:  5'- cCCGCCGaccuGGCCG-GGuGGCugAc -3'
miRNA:   3'- -GGCGGUgcuuCCGGCuCCuCCGugUu -5'
19088 5' -59.5 NC_004684.1 + 22714 0.66 0.556993
Target:  5'- aCGUgGCcAAGGCCGuGGcuGGCACGc -3'
miRNA:   3'- gGCGgUGcUUCCGGCuCCu-CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 12671 0.66 0.556993
Target:  5'- gCGCuCGCugguGGAGGCCGAcGAGGC-CAu -3'
miRNA:   3'- gGCG-GUG----CUUCCGGCUcCUCCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 30974 0.66 0.555952
Target:  5'- uCCaCCACGAAGccguggcGCuCGAGGAGGUAgGc -3'
miRNA:   3'- -GGcGGUGCUUC-------CG-GCUCCUCCGUgUu -5'
19088 5' -59.5 NC_004684.1 + 53630 0.66 0.55076
Target:  5'- gUCGCCugGAgcgccAGGCCGuugagcaccgagguGGuGGCACc- -3'
miRNA:   3'- -GGCGGugCU-----UCCGGCu-------------CCuCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 42104 0.66 0.546617
Target:  5'- gCCGCCugGuguGGCCGgaAGGcccuuGGuGCGCAGc -3'
miRNA:   3'- -GGCGGugCuu-CCGGC--UCC-----UC-CGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 45108 0.66 0.546617
Target:  5'- gCCGCCGCGcGGGCCuuGGccgccgccAGGCGg-- -3'
miRNA:   3'- -GGCGGUGCuUCCGGcuCC--------UCCGUguu -5'
19088 5' -59.5 NC_004684.1 + 37429 0.66 0.536303
Target:  5'- aCCGCCACGGugguGGCaccGGAGGUgaccgACAc -3'
miRNA:   3'- -GGCGGUGCUu---CCGgcuCCUCCG-----UGUu -5'
19088 5' -59.5 NC_004684.1 + 3039 0.66 0.536303
Target:  5'- gCCGCacaACG-AGGCCcGGGugguGGCGCGc -3'
miRNA:   3'- -GGCGg--UGCuUCCGGcUCCu---CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 13129 0.66 0.536303
Target:  5'- -gGCgGCGcuGGCUGAGGAgcugucccGGCGCGGu -3'
miRNA:   3'- ggCGgUGCuuCCGGCUCCU--------CCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 18745 0.66 0.526058
Target:  5'- uCCGgCGCGGugcagcgcaucuGGGCCuGGGaaGAGGCGCAc -3'
miRNA:   3'- -GGCgGUGCU------------UCCGG-CUC--CUCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 9577 0.66 0.515888
Target:  5'- aCCGCCGgGAccAGGCCGuGGucGGGUuccCAGg -3'
miRNA:   3'- -GGCGGUgCU--UCCGGCuCC--UCCGu--GUU- -5'
19088 5' -59.5 NC_004684.1 + 46487 0.66 0.515888
Target:  5'- gCCGCUGCGGuAGGCguuGGAGGC-CAGc -3'
miRNA:   3'- -GGCGGUGCU-UCCGgcuCCUCCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 7994 0.66 0.505798
Target:  5'- aCGCCugGAAGGCCuacGAcgcGGuAGGCGa-- -3'
miRNA:   3'- gGCGGugCUUCCGG---CU---CC-UCCGUguu -5'
19088 5' -59.5 NC_004684.1 + 18561 0.66 0.505798
Target:  5'- aCGCgACGgcGGCCGAGGucaagaccGCGCu- -3'
miRNA:   3'- gGCGgUGCuuCCGGCUCCuc------CGUGuu -5'
19088 5' -59.5 NC_004684.1 + 60856 0.67 0.485879
Target:  5'- aCgGCgGCGAugucGGCCG-GGAGGCGa-- -3'
miRNA:   3'- -GgCGgUGCUu---CCGGCuCCUCCGUguu -5'
19088 5' -59.5 NC_004684.1 + 64693 0.67 0.485879
Target:  5'- cCCGgCAcCGGccAGGCCGGGGAugcggugcccGGCGCu- -3'
miRNA:   3'- -GGCgGU-GCU--UCCGGCUCCU----------CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 21960 0.67 0.479976
Target:  5'- aCGCCAUGAgcggcggcgacaccgAGGCCaAGGuGGUGCGc -3'
miRNA:   3'- gGCGGUGCU---------------UCCGGcUCCuCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 20394 0.67 0.479976
Target:  5'- aCGCgCACG-AGGCCGAGGucAgccuggacgacuccuGGCGCAu -3'
miRNA:   3'- gGCG-GUGCuUCCGGCUCC--U---------------CCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.