miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 3' -52.6 NC_004684.1 + 10145 0.66 0.900893
Target:  5'- aCCUcgUGcUCAGCcaGCCGCCgcug-GCCa -3'
miRNA:   3'- -GGAa-ACuAGUCG--UGGCGGaaccaCGG- -5'
19092 3' -52.6 NC_004684.1 + 47946 0.66 0.900893
Target:  5'- gCCUUggUGGcgUCGGCACgGCUggcGGUGUa -3'
miRNA:   3'- -GGAA--ACU--AGUCGUGgCGGaa-CCACGg -5'
19092 3' -52.6 NC_004684.1 + 24717 0.66 0.900893
Target:  5'- ---cUGGUUGGcCACCGCCgUGaUGCCc -3'
miRNA:   3'- ggaaACUAGUC-GUGGCGGaACcACGG- -5'
19092 3' -52.6 NC_004684.1 + 51602 0.66 0.898818
Target:  5'- ---gUGGUguGCacguugccggugucGCCGCCgcgauaGGUGCCg -3'
miRNA:   3'- ggaaACUAguCG--------------UGGCGGaa----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 19744 0.66 0.893882
Target:  5'- aCCUg-GAgcgugCAGUACCugcgcgGCCUgccGGUGCCc -3'
miRNA:   3'- -GGAaaCUa----GUCGUGG------CGGAa--CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 40995 0.66 0.893882
Target:  5'- gCCggUGG-CGGCguuggccagaucGCCGCCgacguugccGGUGCCg -3'
miRNA:   3'- -GGaaACUaGUCG------------UGGCGGaa-------CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 46300 0.66 0.893882
Target:  5'- aCCUgcgGGUCuucccGCACUGaCCggcccaGGUGCCc -3'
miRNA:   3'- -GGAaa-CUAGu----CGUGGC-GGaa----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 13708 0.66 0.893882
Target:  5'- gCCgaaGAUCaucccgacccaGGCGCUGUCggucGGUGCCa -3'
miRNA:   3'- -GGaaaCUAG-----------UCGUGGCGGaa--CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 45092 0.66 0.893882
Target:  5'- aUCgg-GGuUCGGCACCGCCgccgcgcgggccUUGGccGCCg -3'
miRNA:   3'- -GGaaaCU-AGUCGUGGCGG------------AACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 17677 0.66 0.891002
Target:  5'- -gUUUGAacgCcGCGCCGCCgagcgcgugcccGGUGCCc -3'
miRNA:   3'- ggAAACUa--GuCGUGGCGGaa----------CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 48927 0.66 0.886604
Target:  5'- ----cGA-CAGCACCaGCUc-GGUGCCg -3'
miRNA:   3'- ggaaaCUaGUCGUGG-CGGaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 3794 0.66 0.886604
Target:  5'- --aUUGA-CGcCGCCGCCUUGGcgGUCa -3'
miRNA:   3'- ggaAACUaGUcGUGGCGGAACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 46535 0.66 0.886604
Target:  5'- gCCUgcaccGGUCGGaagaacgaCGCCgguGCgCUUGGUGCCg -3'
miRNA:   3'- -GGAaa---CUAGUC--------GUGG---CG-GAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 47072 0.66 0.886604
Target:  5'- ----cGAUCucgauGGcCGCCGCCgccaUGGUGUCg -3'
miRNA:   3'- ggaaaCUAG-----UC-GUGGCGGa---ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 41245 0.66 0.886604
Target:  5'- uCCUc-GAUCuGCGCgGCCagcgaGGUGCUg -3'
miRNA:   3'- -GGAaaCUAGuCGUGgCGGaa---CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 9841 0.66 0.879064
Target:  5'- gCCgucGAUCAcCGCCGCCggUGaGcUGCCg -3'
miRNA:   3'- -GGaaaCUAGUcGUGGCGGa-AC-C-ACGG- -5'
19092 3' -52.6 NC_004684.1 + 15950 0.66 0.879064
Target:  5'- gCCUac-AUCGGCAUgcagGCCUUGGUgagGCCg -3'
miRNA:   3'- -GGAaacUAGUCGUGg---CGGAACCA---CGG- -5'
19092 3' -52.6 NC_004684.1 + 58042 0.66 0.879064
Target:  5'- ----cGAUgAGCugCGUCU-GGUGCg -3'
miRNA:   3'- ggaaaCUAgUCGugGCGGAaCCACGg -5'
19092 3' -52.6 NC_004684.1 + 46754 0.66 0.878296
Target:  5'- cUCUggGGUCAGCucgacgcgcuggcGCuCGCC--GGUGCCc -3'
miRNA:   3'- -GGAaaCUAGUCG-------------UG-GCGGaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 51703 0.66 0.871268
Target:  5'- gCCggUGGcgUCGGUGCCGCCgcug-GCCa -3'
miRNA:   3'- -GGaaACU--AGUCGUGGCGGaaccaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.