Results 1 - 20 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19092 | 5' | -67.3 | NC_004684.1 | + | 21253 | 0.65 | 0.265911 |
Target: 5'- aGGgCACCaucGGCCugGGCgaugugauccagaaGGUCAGCu -3' miRNA: 3'- gCCgGUGGc--CCGGugCCG--------------CCGGUCGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 18675 | 0.66 | 0.261616 |
Target: 5'- -cGCCGCUGGGCgCgACGGUaaccaucaGCCAGCa -3' miRNA: 3'- gcCGGUGGCCCG-G-UGCCGc-------CGGUCGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 57841 | 0.66 | 0.261616 |
Target: 5'- uGGCCGCCGGuacccGCC-CGauuGCCAGCGu -3' miRNA: 3'- gCCGGUGGCC-----CGGuGCcgcCGGUCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 48969 | 0.66 | 0.261616 |
Target: 5'- gGGUgGCCGGGgCG-GGCGcGUCGGUGc -3' miRNA: 3'- gCCGgUGGCCCgGUgCCGC-CGGUCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 60487 | 0.66 | 0.261616 |
Target: 5'- gGGCaaCACCGGGUgcaggACGGUGaCCAGCa -3' miRNA: 3'- gCCG--GUGGCCCGg----UGCCGCcGGUCGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 692 | 0.66 | 0.261616 |
Target: 5'- uCGGCC-CCGaGGUCAgccgccggUGGaCGGCCuGGCGc -3' miRNA: 3'- -GCCGGuGGC-CCGGU--------GCC-GCCGG-UCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 51463 | 0.66 | 0.261616 |
Target: 5'- cCGGUgGCCGaGGCCcccaggAUGGCGaCCuGCGg -3' miRNA: 3'- -GCCGgUGGC-CCGG------UGCCGCcGGuCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 29954 | 0.66 | 0.261616 |
Target: 5'- uCGGUCAccuCCGGuGCCACcaccguGGCGGUgucgauggaCAGCGu -3' miRNA: 3'- -GCCGGU---GGCC-CGGUG------CCGCCG---------GUCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 10247 | 0.66 | 0.261616 |
Target: 5'- uGGCCgugcgcguggAgCGGGCCAaccaacUGGCCAGCGa -3' miRNA: 3'- gCCGG----------UgGCCCGGUgcc---GCCGGUCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 51321 | 0.66 | 0.261615 |
Target: 5'- uCGGCuCACCggcGGGCCACGcuuGCuuGGCCA-CGa -3' miRNA: 3'- -GCCG-GUGG---CCCGGUGC---CG--CCGGUcGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 57843 | 0.66 | 0.261615 |
Target: 5'- gCGGCgCACCGGcuCCAacCGGCGcaCCAGCu -3' miRNA: 3'- -GCCG-GUGGCCc-GGU--GCCGCc-GGUCGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 64345 | 0.66 | 0.261615 |
Target: 5'- gCGcGCCAccacCCGGGCCucguUGuGCGGCCccucGGUGa -3' miRNA: 3'- -GC-CGGU----GGCCCGGu---GC-CGCCGG----UCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 169 | 0.66 | 0.261007 |
Target: 5'- cCGGUgACCGGGuuggucgggaccaCCACcaaGGUGGCCcuGGCa -3' miRNA: 3'- -GCCGgUGGCCC-------------GGUG---CCGCCGG--UCGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 11800 | 0.66 | 0.260399 |
Target: 5'- aGGCCACCGuggagaaGGgCGCGaGCGcGCCgcuguccGGCGa -3' miRNA: 3'- gCCGGUGGC-------CCgGUGC-CGC-CGG-------UCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 15163 | 0.66 | 0.259792 |
Target: 5'- uGGCCGCCGccGCCACGcaccugggacugguGCuGCgCAGCGg -3' miRNA: 3'- gCCGGUGGCc-CGGUGC--------------CGcCG-GUCGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 39287 | 0.66 | 0.259792 |
Target: 5'- aGGCCucgaACCgcaccacccggugcGGGUCgcGCGGCGGcCCGGCc -3' miRNA: 3'- gCCGG----UGG--------------CCCGG--UGCCGCC-GGUCGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 14708 | 0.66 | 0.255578 |
Target: 5'- -cGCCGCaGGGCCuguACGG-GGCCAcGCa -3' miRNA: 3'- gcCGGUGgCCCGG---UGCCgCCGGU-CGc -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 57141 | 0.66 | 0.255578 |
Target: 5'- gCGGCUgguucGCCuccauGGCgGCGGUGGCCGacGCGc -3' miRNA: 3'- -GCCGG-----UGGc----CCGgUGCCGCCGGU--CGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 57184 | 0.66 | 0.255578 |
Target: 5'- uCGGgCGCaggCGGGCCuggaaGGCGGCgGcGCGa -3' miRNA: 3'- -GCCgGUG---GCCCGGug---CCGCCGgU-CGC- -5' |
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19092 | 5' | -67.3 | NC_004684.1 | + | 65766 | 0.66 | 0.255578 |
Target: 5'- uGGCCGCCGcGcGCCGgugGGCGcGCgcaCGGCGa -3' miRNA: 3'- gCCGGUGGC-C-CGGUg--CCGC-CG---GUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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