miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 3' -54.6 NC_004684.1 + 5176 0.66 0.816104
Target:  5'- uGUCGAgGUgGCGCUGgUugGcCAGgacgGCa -3'
miRNA:   3'- gCAGCUgCAgCGUGAC-GugC-GUCa---UG- -5'
19094 3' -54.6 NC_004684.1 + 41862 0.66 0.816104
Target:  5'- uCGgCGugGUCugGUACUGgACGCAGgcccGCg -3'
miRNA:   3'- -GCaGCugCAG--CGUGACgUGCGUCa---UG- -5'
19094 3' -54.6 NC_004684.1 + 52301 0.66 0.816104
Target:  5'- aCGUgCGAacacaUCGCGCgcaGCuGCGCGGUGCg -3'
miRNA:   3'- -GCA-GCUgc---AGCGUGa--CG-UGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 64836 0.66 0.816104
Target:  5'- -cUCGGCGaaggccuccgCGCGCUcCACGCAGgUGCg -3'
miRNA:   3'- gcAGCUGCa---------GCGUGAcGUGCGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 9303 0.66 0.80681
Target:  5'- -cUCGGCG-CGCucccggucgaGCUGCACGguGcGCa -3'
miRNA:   3'- gcAGCUGCaGCG----------UGACGUGCguCaUG- -5'
19094 3' -54.6 NC_004684.1 + 22248 0.66 0.80681
Target:  5'- cCGUCGACuUCGC-CgagGcCugGguGUACg -3'
miRNA:   3'- -GCAGCUGcAGCGuGa--C-GugCguCAUG- -5'
19094 3' -54.6 NC_004684.1 + 33135 0.66 0.80681
Target:  5'- -cUCGGCaUUGCGCUGUcgagcauggGCGuCAGUACg -3'
miRNA:   3'- gcAGCUGcAGCGUGACG---------UGC-GUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 54601 0.66 0.797337
Target:  5'- -aUCG-CG-CGCGCgUGCGCGC-GUACg -3'
miRNA:   3'- gcAGCuGCaGCGUG-ACGUGCGuCAUG- -5'
19094 3' -54.6 NC_004684.1 + 25190 0.66 0.796381
Target:  5'- aCGUCGGCcaccagcuccacgGcC-CACUGCucaccGCGCAGUGCg -3'
miRNA:   3'- -GCAGCUG-------------CaGcGUGACG-----UGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 61597 0.66 0.787697
Target:  5'- aCGUccCGACcUCGCAC-GCcugGCGCAGUAg -3'
miRNA:   3'- -GCA--GCUGcAGCGUGaCG---UGCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 50396 0.67 0.777898
Target:  5'- uGUCGGCGgggUGCuuGCUGUugG-GGUACa -3'
miRNA:   3'- gCAGCUGCa--GCG--UGACGugCgUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 51545 0.67 0.767952
Target:  5'- aGcCGAgcaccuUGUCGCuCUGCGC-CAGUGCg -3'
miRNA:   3'- gCaGCU------GCAGCGuGACGUGcGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 37251 0.67 0.75787
Target:  5'- gGcCGACG-CGCACacuGCGCGGUGCc -3'
miRNA:   3'- gCaGCUGCaGCGUGacgUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 49142 0.67 0.75787
Target:  5'- cCGUCGcCGgucUCGCACacCGgGCAGUACg -3'
miRNA:   3'- -GCAGCuGC---AGCGUGacGUgCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 22707 0.67 0.748689
Target:  5'- aGUCGACGccagcgacaucggcaUCGCGCcGCcgcagcagcgggugACGCAGUGg -3'
miRNA:   3'- gCAGCUGC---------------AGCGUGaCG--------------UGCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 53192 0.67 0.747663
Target:  5'- cCGUUGACGcacagCGggaGCUGCACGUugaucgAGUGCu -3'
miRNA:   3'- -GCAGCUGCa----GCg--UGACGUGCG------UCAUG- -5'
19094 3' -54.6 NC_004684.1 + 61657 0.67 0.741483
Target:  5'- uGUCGGCGaaguagcaggugugCGC-CUGCACGCcauuggcgucGGUGCc -3'
miRNA:   3'- gCAGCUGCa-------------GCGuGACGUGCG----------UCAUG- -5'
19094 3' -54.6 NC_004684.1 + 30226 0.67 0.737341
Target:  5'- uCGgcgCGACGUggcccucggCGCGCUcccagaacugGCgGCGCAGUGCg -3'
miRNA:   3'- -GCa--GCUGCA---------GCGUGA----------CG-UGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 35787 0.67 0.737341
Target:  5'- uGUUGGCGUCGCcgucagGCUGUugAUGUuGUGCg -3'
miRNA:   3'- gCAGCUGCAGCG------UGACG--UGCGuCAUG- -5'
19094 3' -54.6 NC_004684.1 + 32055 0.67 0.737341
Target:  5'- aGUCGGCGUugaCGCACacgGCgACGCAccGCg -3'
miRNA:   3'- gCAGCUGCA---GCGUGa--CG-UGCGUcaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.