miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 5' -62 NC_004684.1 + 24722 0.66 0.444571
Target:  5'- uGGcCACCgCCGUGaugccCUC-CAcCGCGCUCAu -3'
miRNA:   3'- gCC-GUGG-GGCAC-----GAGcGU-GCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 22234 0.66 0.444571
Target:  5'- aCGGCACCCgCGcGaucaacgCGCAgGCGCgagCAu -3'
miRNA:   3'- -GCCGUGGG-GCaCga-----GCGUgCGCGa--GU- -5'
19094 5' -62 NC_004684.1 + 19534 0.66 0.435396
Target:  5'- cCGGCACCgccuCCG-GUUCGCgcuACGUGCcgUCAg -3'
miRNA:   3'- -GCCGUGG----GGCaCGAGCG---UGCGCG--AGU- -5'
19094 5' -62 NC_004684.1 + 64159 0.66 0.435396
Target:  5'- uGGUcUCCgcguugagguCGUGCUCGCGCGCGUccCAg -3'
miRNA:   3'- gCCGuGGG----------GCACGAGCGUGCGCGa-GU- -5'
19094 5' -62 NC_004684.1 + 65597 0.66 0.435396
Target:  5'- cCGGCgACCUCGcccuuCUCGCagcuguugGCGCGCUCc -3'
miRNA:   3'- -GCCG-UGGGGCac---GAGCG--------UGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 67072 0.66 0.435396
Target:  5'- -cGUACCCgGUGCgggCGUugGC-CUCGg -3'
miRNA:   3'- gcCGUGGGgCACGa--GCGugCGcGAGU- -5'
19094 5' -62 NC_004684.1 + 51528 0.66 0.426331
Target:  5'- uGGCGgCCaCGUGCUCGaugaccucgGCGUGCgUCGg -3'
miRNA:   3'- gCCGUgGG-GCACGAGCg--------UGCGCG-AGU- -5'
19094 5' -62 NC_004684.1 + 30800 0.66 0.426331
Target:  5'- cCGGCACCuacaCCGUGCcgUCGgGCaccaaccggaucGUGCUCGa -3'
miRNA:   3'- -GCCGUGG----GGCACG--AGCgUG------------CGCGAGU- -5'
19094 5' -62 NC_004684.1 + 33499 0.66 0.426331
Target:  5'- gCGGCgGCCCUGUaCUCGCGgGCGgUg- -3'
miRNA:   3'- -GCCG-UGGGGCAcGAGCGUgCGCgAgu -5'
19094 5' -62 NC_004684.1 + 15092 0.66 0.426331
Target:  5'- uGcGCGCgaUGUGUUCGCACGUGC-CAg -3'
miRNA:   3'- gC-CGUGggGCACGAGCGUGCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 9288 0.66 0.41738
Target:  5'- gCGG-ACCCgGccaUGCUCG-GCGCGCUCc -3'
miRNA:   3'- -GCCgUGGGgC---ACGAGCgUGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 1605 0.66 0.41738
Target:  5'- aCGGCAUCggucgCCGUGCgcgCGCccaccgGCGCGCg-- -3'
miRNA:   3'- -GCCGUGG-----GGCACGa--GCG------UGCGCGagu -5'
19094 5' -62 NC_004684.1 + 24991 0.66 0.408544
Target:  5'- gCGGCAUCCUGcccaaccCGguCGCGCUCAg -3'
miRNA:   3'- -GCCGUGGGGCacga---GCguGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 46704 0.66 0.408544
Target:  5'- gGcGCGCCCUGUGCga--GCGCGC-CAc -3'
miRNA:   3'- gC-CGUGGGGCACGagcgUGCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 8645 0.66 0.399826
Target:  5'- uCGGCACCCCc-GC-CGUACaGCaGCUCc -3'
miRNA:   3'- -GCCGUGGGGcaCGaGCGUG-CG-CGAGu -5'
19094 5' -62 NC_004684.1 + 47434 0.66 0.399826
Target:  5'- cCGGCACCaCC-UGgUCGCGCa-GCUCGc -3'
miRNA:   3'- -GCCGUGG-GGcACgAGCGUGcgCGAGU- -5'
19094 5' -62 NC_004684.1 + 14481 0.66 0.399826
Target:  5'- gCGGCcacGCCgCCGUGCUgGC-CGgaCGCUCc -3'
miRNA:   3'- -GCCG---UGG-GGCACGAgCGuGC--GCGAGu -5'
19094 5' -62 NC_004684.1 + 8725 0.66 0.399826
Target:  5'- gCGGCGCugauCCCGaUGUUCGCcgcCGCGCcCGg -3'
miRNA:   3'- -GCCGUG----GGGC-ACGAGCGu--GCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 13776 0.67 0.391228
Target:  5'- gGGUGUCCgG-GC-CGCGCGUGCUCAa -3'
miRNA:   3'- gCCGUGGGgCaCGaGCGUGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 42484 0.67 0.391228
Target:  5'- uCGGCAUCCUGUccaacgaccagGCcaaCGCgaucaacgGCGCGCUCAc -3'
miRNA:   3'- -GCCGUGGGGCA-----------CGa--GCG--------UGCGCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.