miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19095 5' -61.6 NC_004684.1 + 13200 0.66 0.43523
Target:  5'- aGGCCGCCgGUuUGCGCCuGCUgaUCAUu -3'
miRNA:   3'- aCUGGCGGaCGuACGCGG-CGAg-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 57121 0.66 0.43523
Target:  5'- cGACCGCUgGCAgcacugGCGCgGCUgguucgccUCCAUg -3'
miRNA:   3'- aCUGGCGGaCGUa-----CGCGgCGA--------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 24491 0.66 0.43523
Target:  5'- -uACCGCCggggGCG-GUGCCGCagggCCgCGCg -3'
miRNA:   3'- acUGGCGGa---CGUaCGCGGCGa---GG-GUG- -5'
19095 5' -61.6 NC_004684.1 + 47643 0.66 0.434305
Target:  5'- aGGCCGCgcagguaCUGCAcgcuccagGUGCCGCgCUCACc -3'
miRNA:   3'- aCUGGCG-------GACGUa-------CGCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 39534 0.66 0.426036
Target:  5'- cGACCGgcacuCCUGCGUGCacaGCgCGCUcggugCCCAg -3'
miRNA:   3'- aCUGGC-----GGACGUACG---CG-GCGA-----GGGUg -5'
19095 5' -61.6 NC_004684.1 + 483 0.66 0.426036
Target:  5'- gUGGCCGCCaagGCc-GCGCCGaaggCCGCg -3'
miRNA:   3'- -ACUGGCGGa--CGuaCGCGGCgag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 33653 0.66 0.426036
Target:  5'- cGACCccucGCCggGCAUgGCGUCGCUgugcaCCACc -3'
miRNA:   3'- aCUGG----CGGa-CGUA-CGCGGCGAg----GGUG- -5'
19095 5' -61.6 NC_004684.1 + 58458 0.66 0.426036
Target:  5'- cGACUGCCcGCugagGCcagcgcgaacuuGCCGCgCCCGCc -3'
miRNA:   3'- aCUGGCGGaCGua--CG------------CGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 10002 0.66 0.41696
Target:  5'- cUGGCCGCCUGgAUaGCGacugguaaCCGCgcaaaagacCCCGCc -3'
miRNA:   3'- -ACUGGCGGACgUA-CGC--------GGCGa--------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 45039 0.66 0.41696
Target:  5'- cGACCGCC-GCcgcCGCCGC-CaCCGCc -3'
miRNA:   3'- aCUGGCGGaCGuacGCGGCGaG-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 39580 0.66 0.41696
Target:  5'- aGGCCGCCcucaacagcUGCucGgGCCaccacgcagcGCUCCCACu -3'
miRNA:   3'- aCUGGCGG---------ACGuaCgCGG----------CGAGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 28208 0.66 0.41696
Target:  5'- aGcACCGCCaGCcUGCGCUaccugGCcgCCCACc -3'
miRNA:   3'- aC-UGGCGGaCGuACGCGG-----CGa-GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 13084 0.66 0.416058
Target:  5'- gGugCGCCccgguucgcgcggUGCA--CGCCGC-CCCACc -3'
miRNA:   3'- aCugGCGG-------------ACGUacGCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 1576 0.66 0.408002
Target:  5'- gGugCGCCUGUcUGCGCUGagcgCCaGCg -3'
miRNA:   3'- aCugGCGGACGuACGCGGCga--GGgUG- -5'
19095 5' -61.6 NC_004684.1 + 12941 0.66 0.408002
Target:  5'- -cGCCGCCgucgGCAccccCGgUGCUCCCGCc -3'
miRNA:   3'- acUGGCGGa---CGUac--GCgGCGAGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 57779 0.66 0.408002
Target:  5'- ---gCGCCUGCAcgGCG-CGCUCCUcgaGCa -3'
miRNA:   3'- acugGCGGACGUa-CGCgGCGAGGG---UG- -5'
19095 5' -61.6 NC_004684.1 + 47028 0.66 0.408002
Target:  5'- cGACUgGCCUucGCAguaGCCGC-CCCACc -3'
miRNA:   3'- aCUGG-CGGA--CGUacgCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 62951 0.66 0.399166
Target:  5'- cGGCCuCCaGC-UGCGCCaGCaggCCCGCg -3'
miRNA:   3'- aCUGGcGGaCGuACGCGG-CGa--GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 27257 0.66 0.399166
Target:  5'- gGAUCGCCgagGUcgGUGCcgagGCCGCcagcgCCCGCu -3'
miRNA:   3'- aCUGGCGGa--CG--UACG----CGGCGa----GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 61674 0.66 0.399166
Target:  5'- gUGugCGCCUGCAcgccauugGCGUCGgUgCCGu -3'
miRNA:   3'- -ACugGCGGACGUa-------CGCGGCgAgGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.