miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 3' -56.9 NC_004684.1 + 51398 0.66 0.745713
Target:  5'- cCGGAGccgGACguuUCGGCCUCuGCCGGUGUCa -3'
miRNA:   3'- -GCCUC---UUG---AGCUGGAG-UGGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 30891 0.66 0.745713
Target:  5'- aGGcucAGCguccCGGCCUUGCCGAUGUCGa -3'
miRNA:   3'- gCCuc-UUGa---GCUGGAGUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 60437 0.66 0.745713
Target:  5'- uGGAacgacucgccGggUUCGACCUCGgCCaGcAUGCCGg -3'
miRNA:   3'- gCCU----------CuuGAGCUGGAGU-GG-C-UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 12855 0.66 0.735659
Target:  5'- gCGGAGGccgaGGCCgccacCGCCGAgGCCGc -3'
miRNA:   3'- -GCCUCUugagCUGGa----GUGGCUgCGGC- -5'
19096 3' -56.9 NC_004684.1 + 14125 0.66 0.735659
Target:  5'- gGuGGGAGC-CGAUgaCACCGgagcGCGCCGg -3'
miRNA:   3'- gC-CUCUUGaGCUGgaGUGGC----UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 18395 0.66 0.735659
Target:  5'- gCGGGGucggGCcCGGCCagcagggCACCGACGCg- -3'
miRNA:   3'- -GCCUCu---UGaGCUGGa------GUGGCUGCGgc -5'
19096 3' -56.9 NC_004684.1 + 57095 0.66 0.735659
Target:  5'- uCGGu--GCgggCGACCUCuggcgcgacACCGGCGUCGc -3'
miRNA:   3'- -GCCucuUGa--GCUGGAG---------UGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 46408 0.66 0.735659
Target:  5'- aGGAucGGGC-CGACCUgCGCCGcCGCUc -3'
miRNA:   3'- gCCU--CUUGaGCUGGA-GUGGCuGCGGc -5'
19096 3' -56.9 NC_004684.1 + 39370 0.66 0.725509
Target:  5'- uCGGGGAACcagcccuuguaCGGCCcgaUCACCG-CGUCGg -3'
miRNA:   3'- -GCCUCUUGa----------GCUGG---AGUGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 12054 0.66 0.725509
Target:  5'- aGGAGGcgGCUCG-CCUgGCCGccgaGCGCg- -3'
miRNA:   3'- gCCUCU--UGAGCuGGAgUGGC----UGCGgc -5'
19096 3' -56.9 NC_004684.1 + 9227 0.66 0.725509
Target:  5'- gGGccAGGACcCGaACCUgcUGCCGACGCUGg -3'
miRNA:   3'- gCC--UCUUGaGC-UGGA--GUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 13409 0.66 0.715273
Target:  5'- cCGGAcGugUCGGCCcugcUCACCGACuUCGc -3'
miRNA:   3'- -GCCUcUugAGCUGG----AGUGGCUGcGGC- -5'
19096 3' -56.9 NC_004684.1 + 21520 0.66 0.704962
Target:  5'- uGGAcGGCgCGcACaugaUCGCCGACGCCa -3'
miRNA:   3'- gCCUcUUGaGC-UGg---AGUGGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 44937 0.66 0.704962
Target:  5'- uGGAGcGCgggCGGgaUCGCCGccGCGCCGa -3'
miRNA:   3'- gCCUCuUGa--GCUggAGUGGC--UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 22128 0.66 0.704962
Target:  5'- cCGGAcgcaaGGGCcgCGACCagCGCUGGCuGCCGg -3'
miRNA:   3'- -GCCU-----CUUGa-GCUGGa-GUGGCUG-CGGC- -5'
19096 3' -56.9 NC_004684.1 + 40646 0.66 0.704962
Target:  5'- uCGGucaucuccaucaGGGugUCGcggGCCUCGauuUCGACGCCGa -3'
miRNA:   3'- -GCC------------UCUugAGC---UGGAGU---GGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 47697 0.66 0.694584
Target:  5'- aGGucuuGGCUCGgccagGCCUUGCCGccGCGCCGg -3'
miRNA:   3'- gCCuc--UUGAGC-----UGGAGUGGC--UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 21373 0.66 0.694584
Target:  5'- uGGAcaagcuGGACgaCGugCgCACCGugGCCGg -3'
miRNA:   3'- gCCU------CUUGa-GCugGaGUGGCugCGGC- -5'
19096 3' -56.9 NC_004684.1 + 60183 0.66 0.694584
Target:  5'- aGGGGAGCgggUCGGaCUUGCCG-UGCCGg -3'
miRNA:   3'- gCCUCUUG---AGCUgGAGUGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 63539 0.66 0.694584
Target:  5'- gCGGgcguGGcGCUCGGCCUCcucgGCCGcUGCCa -3'
miRNA:   3'- -GCC----UCuUGAGCUGGAG----UGGCuGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.