miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19098 3' -53.3 NC_004684.1 + 13684 0.66 0.875046
Target:  5'- gGACaUGGUGGCCGguucgggcaCGCcGAAGAucaUCCCGa -3'
miRNA:   3'- -CUG-ACCAUUGGC---------GCGuUUUCU---GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 11775 0.66 0.867137
Target:  5'- gGugUGGUGGCCcCGUggGccgaccAGGCCaCCGu -3'
miRNA:   3'- -CugACCAUUGGcGCGuuU------UCUGG-GGC- -5'
19098 3' -53.3 NC_004684.1 + 6835 0.66 0.867137
Target:  5'- aGCUGGccuACgGCGCGAAGGGCgacgCCGu -3'
miRNA:   3'- cUGACCau-UGgCGCGUUUUCUGg---GGC- -5'
19098 3' -53.3 NC_004684.1 + 20062 0.66 0.867137
Target:  5'- cGCguucGUGGCCGCGCucAAGcuggcguucaACCCCGa -3'
miRNA:   3'- cUGac--CAUUGGCGCGuuUUC----------UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 41996 0.66 0.867137
Target:  5'- ---cGGUGGCCGCugGCGAcaaccuccuGGAUCCCGu -3'
miRNA:   3'- cugaCCAUUGGCG--CGUUu--------UCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 49648 0.66 0.867137
Target:  5'- aGGC-GGuUGGCCGCGCc--GGAUUCCGg -3'
miRNA:   3'- -CUGaCC-AUUGGCGCGuuuUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 33764 0.66 0.866332
Target:  5'- uGACgaGGUAGCCgcccgacgauccgGCGCugccuGGCCCCa -3'
miRNA:   3'- -CUGa-CCAUUGG-------------CGCGuuuu-CUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 55483 0.66 0.858983
Target:  5'- nGGCUgucGGUGguGCCGCGCAcguuGAaUCCCGg -3'
miRNA:   3'- -CUGA---CCAU--UGGCGCGUuuu-CU-GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 31174 0.66 0.858983
Target:  5'- uGCUGGgccaGAUCGgGCA--AGGCCUCGu -3'
miRNA:   3'- cUGACCa---UUGGCgCGUuuUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 54500 0.66 0.858983
Target:  5'- cGCUGGcGGCgaGCGCAGGcu-CCCCGg -3'
miRNA:   3'- cUGACCaUUGg-CGCGUUUucuGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 57590 0.66 0.858983
Target:  5'- aGCgucgGGUGccACCgGCGCA--GGGCCUCGg -3'
miRNA:   3'- cUGa---CCAU--UGG-CGCGUuuUCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 41149 0.66 0.850592
Target:  5'- -uCUGGgguacGCCGCGCc--GGACCCgCGc -3'
miRNA:   3'- cuGACCau---UGGCGCGuuuUCUGGG-GC- -5'
19098 3' -53.3 NC_004684.1 + 19125 0.66 0.850592
Target:  5'- cGCaUGGUGGCCGaCGaCAAcGGAcgccuCCCCGg -3'
miRNA:   3'- cUG-ACCAUUGGC-GC-GUUuUCU-----GGGGC- -5'
19098 3' -53.3 NC_004684.1 + 5785 0.66 0.841971
Target:  5'- uGCgUGGUGugCGgGCGGGAcGCCUCGa -3'
miRNA:   3'- cUG-ACCAUugGCgCGUUUUcUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 62993 0.66 0.841971
Target:  5'- uGGCcGGUGGCCgggaacgcgauGCGCAGGAuGACCgCGc -3'
miRNA:   3'- -CUGaCCAUUGG-----------CGCGUUUU-CUGGgGC- -5'
19098 3' -53.3 NC_004684.1 + 48964 0.66 0.841096
Target:  5'- gGGCggGGUGGCCggggcggGCGCGucGGugCCCu -3'
miRNA:   3'- -CUGa-CCAUUGG-------CGCGUuuUCugGGGc -5'
19098 3' -53.3 NC_004684.1 + 7741 0.66 0.836691
Target:  5'- cGACUGGcgcgcaugggggaccUGACCGgGCc---GACCCCc -3'
miRNA:   3'- -CUGACC---------------AUUGGCgCGuuuuCUGGGGc -5'
19098 3' -53.3 NC_004684.1 + 55453 0.66 0.833129
Target:  5'- aGGCUGGcGACCaugGCcaGCGGAcGGCCCUGg -3'
miRNA:   3'- -CUGACCaUUGG---CG--CGUUUuCUGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 5319 0.66 0.830434
Target:  5'- cGCUGGcGACCGUGCAGcaguggguggcgguGGGcugacaugcccACCCCGc -3'
miRNA:   3'- cUGACCaUUGGCGCGUU--------------UUC-----------UGGGGC- -5'
19098 3' -53.3 NC_004684.1 + 54289 0.67 0.824075
Target:  5'- cGGCcGGggGugCGCGCAuc-GGCCCCc -3'
miRNA:   3'- -CUGaCCa-UugGCGCGUuuuCUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.