miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 3' -58 NC_004684.1 + 62311 0.66 0.620924
Target:  5'- cGCGGGCCucCGcGAUcucaucgccGGAGGCCUccAGCa -3'
miRNA:   3'- uCGUUCGGu-GC-CUA---------UCUCCGGG--UCGc -5'
19100 3' -58 NC_004684.1 + 52157 0.66 0.620924
Target:  5'- cGGCGGGCCGuagcugucCGGGUAGGcgaaccGGgCCAGUa -3'
miRNA:   3'- -UCGUUCGGU--------GCCUAUCU------CCgGGUCGc -5'
19100 3' -58 NC_004684.1 + 18377 0.66 0.620923
Target:  5'- cGguGGCCgaucuguucaGCGGGgucGGGCCCGGCc -3'
miRNA:   3'- uCguUCGG----------UGCCUaucUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 15963 0.66 0.619846
Target:  5'- uGCAGGCCuuGGu--GAGGCCgugacacCGGCa -3'
miRNA:   3'- uCGUUCGGugCCuauCUCCGG-------GUCGc -5'
19100 3' -58 NC_004684.1 + 6070 0.66 0.610157
Target:  5'- cGCc-GCCGaGGGcGGcGGCCCGGCGg -3'
miRNA:   3'- uCGuuCGGUgCCUaUCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 11359 0.66 0.610157
Target:  5'- -cCAGGcCCACGG-UGGuGGCCagCAGCGu -3'
miRNA:   3'- ucGUUC-GGUGCCuAUCuCCGG--GUCGC- -5'
19100 3' -58 NC_004684.1 + 37095 0.66 0.610157
Target:  5'- cGCGAuGCUGCGGAgaacguugaGGAGGgCUGGCGu -3'
miRNA:   3'- uCGUU-CGGUGCCUa--------UCUCCgGGUCGC- -5'
19100 3' -58 NC_004684.1 + 57035 0.66 0.599409
Target:  5'- uGGUcGGUCACGG-UGGGccacGGCaCCAGCGc -3'
miRNA:   3'- -UCGuUCGGUGCCuAUCU----CCG-GGUCGC- -5'
19100 3' -58 NC_004684.1 + 61175 0.66 0.599409
Target:  5'- cGGcCAGGUCgGCGGGguUGGuGGCCuCGGCGu -3'
miRNA:   3'- -UC-GUUCGG-UGCCU--AUCuCCGG-GUCGC- -5'
19100 3' -58 NC_004684.1 + 60749 0.66 0.599409
Target:  5'- cGGguGGCCGcCGGGUGGGGGUuggUCAGg- -3'
miRNA:   3'- -UCguUCGGU-GCCUAUCUCCG---GGUCgc -5'
19100 3' -58 NC_004684.1 + 21897 0.66 0.599409
Target:  5'- uAGC-AGCCuugUGcGAUAGccuGGCCCGGUGa -3'
miRNA:   3'- -UCGuUCGGu--GC-CUAUCu--CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 33185 0.66 0.598336
Target:  5'- cGGCAaggucgucaccguGGCCAUGGcgacGGAcaGCCCGGCGg -3'
miRNA:   3'- -UCGU-------------UCGGUGCCua--UCUc-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 57801 0.66 0.578001
Target:  5'- gAGCAugcugucccAGCCACGGAUcAGGucGGCCacguguucgCGGCGc -3'
miRNA:   3'- -UCGU---------UCGGUGCCUA-UCU--CCGG---------GUCGC- -5'
19100 3' -58 NC_004684.1 + 20628 0.66 0.578001
Target:  5'- cGGCGAGCgccaGCGcGUcgagcugaccccAGAGGUCCGGCGc -3'
miRNA:   3'- -UCGUUCGg---UGCcUA------------UCUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 62898 0.66 0.567358
Target:  5'- uGCcguuGCCACGGcgGGccAGGCCCuGGCc -3'
miRNA:   3'- uCGuu--CGGUGCCuaUC--UCCGGG-UCGc -5'
19100 3' -58 NC_004684.1 + 45554 0.66 0.567358
Target:  5'- gGGC-GGCCAUGGAU----GCCCGGCu -3'
miRNA:   3'- -UCGuUCGGUGCCUAucucCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 39310 0.67 0.556765
Target:  5'- uGCGGGUCGCGc--GGcGGCCCGGCc -3'
miRNA:   3'- uCGUUCGGUGCcuaUCuCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 53467 0.67 0.546229
Target:  5'- cAGCAccGGCaACGGGUGGuuGGCCagguaGGCGu -3'
miRNA:   3'- -UCGU--UCGgUGCCUAUCu-CCGGg----UCGC- -5'
19100 3' -58 NC_004684.1 + 36918 0.67 0.546229
Target:  5'- uGGCAucGCC-CGGuc-GAGGCCgGGUGg -3'
miRNA:   3'- -UCGUu-CGGuGCCuauCUCCGGgUCGC- -5'
19100 3' -58 NC_004684.1 + 65532 0.67 0.535758
Target:  5'- ---cGGCCAggUGGAUAuGcGGCCCGGCGu -3'
miRNA:   3'- ucguUCGGU--GCCUAU-CuCCGGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.