miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 4013 0.66 0.686364
Target:  5'- cGCCGCCAuCGgcuggcgcgucGGCCGcUCGGUgCGcuGGGCGg -3'
miRNA:   3'- -CGGCGGU-GC-----------CCGGC-AGCUA-GU--UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 66173 0.66 0.675777
Target:  5'- gGCCGCCGa-GGCCGaCGAagUCGAcGCc -3'
miRNA:   3'- -CGGCGGUgcCCGGCaGCU--AGUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 3602 0.66 0.675777
Target:  5'- cGUCGCgCACuGGGCCGcCGAacacgaguggcCGAAGCGc -3'
miRNA:   3'- -CGGCG-GUG-CCCGGCaGCUa----------GUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 47606 0.66 0.675777
Target:  5'- gGCCGCaCACc-GCCGUCGGUaCucGGCGu -3'
miRNA:   3'- -CGGCG-GUGccCGGCAGCUA-GuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 518 0.66 0.666215
Target:  5'- gGUCGCCAcCGGcGCUGacgugcuggccagcgCGGUCGAGGCc -3'
miRNA:   3'- -CGGCGGU-GCC-CGGCa--------------GCUAGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 38823 0.66 0.665151
Target:  5'- aGCCGCCgcacaccggugGCGGGgUGUUGGUgAccGCGa -3'
miRNA:   3'- -CGGCGG-----------UGCCCgGCAGCUAgUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 60354 0.66 0.665151
Target:  5'- uCgGCCAgCGGuGCCagGUCGGUCAGguugGGCAu -3'
miRNA:   3'- cGgCGGU-GCC-CGG--CAGCUAGUU----UCGU- -5'
19100 5' -57.3 NC_004684.1 + 50588 0.66 0.665151
Target:  5'- aGCCuauGCCGuCGGGUCGgCGGUC--GGCGg -3'
miRNA:   3'- -CGG---CGGU-GCCCGGCaGCUAGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 34184 0.66 0.665151
Target:  5'- gGCCGCC--GGGCUGUCcGUCGccauGGCc -3'
miRNA:   3'- -CGGCGGugCCCGGCAGcUAGUu---UCGu -5'
19100 5' -57.3 NC_004684.1 + 40662 0.66 0.665151
Target:  5'- gGgUGUCGCGGGCC-UCGAUUucgacgccGAGCAc -3'
miRNA:   3'- -CgGCGGUGCCCGGcAGCUAGu-------UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 42415 0.66 0.661957
Target:  5'- cGCCGaCGCGGGCCaagGUaugggcaggacuggCGGUCAucGCGc -3'
miRNA:   3'- -CGGCgGUGCCCGG---CA--------------GCUAGUuuCGU- -5'
19100 5' -57.3 NC_004684.1 + 40233 0.66 0.658761
Target:  5'- cGCCGCCGuagcUGGugaucgaaucgcccaGCaCGUCGAUCAGcgucccGGCAa -3'
miRNA:   3'- -CGGCGGU----GCC---------------CG-GCAGCUAGUU------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 36761 0.66 0.654495
Target:  5'- cGCCGCCA-GGGCCGcgccCGGUgcCGAcGCu -3'
miRNA:   3'- -CGGCGGUgCCCGGCa---GCUA--GUUuCGu -5'
19100 5' -57.3 NC_004684.1 + 45091 0.66 0.654495
Target:  5'- cGCCGCCAgGaGGCCGacuugUCGuUgAAGGUg -3'
miRNA:   3'- -CGGCGGUgC-CCGGC-----AGCuAgUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 7331 0.66 0.654495
Target:  5'- gGCCGCC--GGGCCGcgcgccaCGAgugCGAGGCc -3'
miRNA:   3'- -CGGCGGugCCCGGCa------GCUa--GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 12450 0.66 0.643821
Target:  5'- --gGCUGCGGGCCGgggagcaaUCGAcCGAGGUAc -3'
miRNA:   3'- cggCGGUGCCCGGC--------AGCUaGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 67061 0.66 0.643821
Target:  5'- cCCGCCAacaccucguUGGGCCGccCGGUCuuGGUc -3'
miRNA:   3'- cGGCGGU---------GCCCGGCa-GCUAGuuUCGu -5'
19100 5' -57.3 NC_004684.1 + 47235 0.66 0.643821
Target:  5'- cGCCGCaagggcCGGGCCGUCaccggCGAAGa- -3'
miRNA:   3'- -CGGCGgu----GCCCGGCAGcua--GUUUCgu -5'
19100 5' -57.3 NC_004684.1 + 63986 0.66 0.643821
Target:  5'- cGgUGCCAgGGuGCCGUUGGUCucgauguGCAc -3'
miRNA:   3'- -CgGCGGUgCC-CGGCAGCUAGuuu----CGU- -5'
19100 5' -57.3 NC_004684.1 + 55560 0.66 0.643821
Target:  5'- gGCCGCCGuggccCGguGGCCGggGGUCcAGGCAc -3'
miRNA:   3'- -CGGCGGU-----GC--CCGGCagCUAGuUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.