miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 5' -63.4 NC_004684.1 + 19104 0.66 0.371001
Target:  5'- cGCGaaGGCCG-GUgggacGUGCGCAUGGUGg -3'
miRNA:   3'- -UGCc-CCGGCuCGac---CGCGCGUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 13277 0.66 0.371001
Target:  5'- cUGGuGGCCGccgguGGCUGGUGCGCGccGUc -3'
miRNA:   3'- uGCC-CCGGC-----UCGACCGCGCGUacCAc -5'
19106 5' -63.4 NC_004684.1 + 40001 0.66 0.36284
Target:  5'- uGCGucGGGuuGAGCacgcgcuccGGCGCG-AUGGUGg -3'
miRNA:   3'- -UGC--CCCggCUCGa--------CCGCGCgUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 28073 0.66 0.36284
Target:  5'- gGCGGuguGGCCGGGCcGcCGCGCgacccgcaccggGUGGUGc -3'
miRNA:   3'- -UGCC---CCGGCUCGaCcGCGCG------------UACCAC- -5'
19106 5' -63.4 NC_004684.1 + 65866 0.66 0.362031
Target:  5'- cGCGGGucgcgucgucgccGuuGAGCgcGGCGCGCA-GGUu -3'
miRNA:   3'- -UGCCC-------------CggCUCGa-CCGCGCGUaCCAc -5'
19106 5' -63.4 NC_004684.1 + 1924 0.66 0.354804
Target:  5'- cCGGccuGCCGGGcCUGGUaccgGCGCAcGGUGg -3'
miRNA:   3'- uGCCc--CGGCUC-GACCG----CGCGUaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 53408 0.66 0.346894
Target:  5'- -aGGuGGCCGGGCUGGCcuGCGCc----- -3'
miRNA:   3'- ugCC-CCGGCUCGACCG--CGCGuaccac -5'
19106 5' -63.4 NC_004684.1 + 11846 0.66 0.346894
Target:  5'- cACGGcGGCC-AGC-GGCGCGaguuCGUGGUu -3'
miRNA:   3'- -UGCC-CCGGcUCGaCCGCGC----GUACCAc -5'
19106 5' -63.4 NC_004684.1 + 49064 0.66 0.346894
Target:  5'- cCGGGGgCG-GCaccGGCGUGCGgaacagGGUGa -3'
miRNA:   3'- uGCCCCgGCuCGa--CCGCGCGUa-----CCAC- -5'
19106 5' -63.4 NC_004684.1 + 38131 0.66 0.34611
Target:  5'- gUGGaGGCCGAcuucgacGCauucGCGCGCAUGGUc -3'
miRNA:   3'- uGCC-CCGGCU-------CGac--CGCGCGUACCAc -5'
19106 5' -63.4 NC_004684.1 + 23191 0.66 0.342209
Target:  5'- cCuGGGUCGAcaaguaccgcgagguGCUGGCGCGCGccgGGUu -3'
miRNA:   3'- uGcCCCGGCU---------------CGACCGCGCGUa--CCAc -5'
19106 5' -63.4 NC_004684.1 + 7568 0.66 0.339112
Target:  5'- cCGGGuggcGCUGgugcGGCUGGUGCGCGgcaacccGGUGg -3'
miRNA:   3'- uGCCC----CGGC----UCGACCGCGCGUa------CCAC- -5'
19106 5' -63.4 NC_004684.1 + 4382 0.66 0.331457
Target:  5'- cCGGaGGCCGAGCUGGUcuaucGCGCc----- -3'
miRNA:   3'- uGCC-CCGGCUCGACCG-----CGCGuaccac -5'
19106 5' -63.4 NC_004684.1 + 15591 0.66 0.331457
Target:  5'- -aGGGGgCGcGCUcGGUGCGCuaccgGGUGc -3'
miRNA:   3'- ugCCCCgGCuCGA-CCGCGCGua---CCAC- -5'
19106 5' -63.4 NC_004684.1 + 47934 0.66 0.331457
Target:  5'- cGCGcGGGCCaccgccgcccGGGCaUGG-GCGCAcGGUGg -3'
miRNA:   3'- -UGC-CCCGG----------CUCG-ACCgCGCGUaCCAC- -5'
19106 5' -63.4 NC_004684.1 + 39048 0.66 0.331457
Target:  5'- gACGGuGGCCu-GCUGGuUGCGCuUGGa- -3'
miRNA:   3'- -UGCC-CCGGcuCGACC-GCGCGuACCac -5'
19106 5' -63.4 NC_004684.1 + 18565 0.66 0.331457
Target:  5'- gACGGcGGCCGAGgUcaagacCGCGC-UGGUGg -3'
miRNA:   3'- -UGCC-CCGGCUCgAcc----GCGCGuACCAC- -5'
19106 5' -63.4 NC_004684.1 + 9464 0.66 0.331457
Target:  5'- cCGGGcGCUgGAGCUGGCGgGCAa---- -3'
miRNA:   3'- uGCCC-CGG-CUCGACCGCgCGUaccac -5'
19106 5' -63.4 NC_004684.1 + 2053 0.66 0.330698
Target:  5'- -gGGGGCCGccaucguGGCcugccUGGCGCuggcCGUGGUGc -3'
miRNA:   3'- ugCCCCGGC-------UCG-----ACCGCGc---GUACCAC- -5'
19106 5' -63.4 NC_004684.1 + 55026 0.66 0.32843
Target:  5'- -gGGGaGCCGaAGgUGGUGCGCAgugugcccagcgcGGUGa -3'
miRNA:   3'- ugCCC-CGGC-UCgACCGCGCGUa------------CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.