miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 5' -57 NC_004684.1 + 36217 0.66 0.730454
Target:  5'- gGCC-UUGCCCG--AUCUGGcccagcACCGCCg -3'
miRNA:   3'- gCGGcAAUGGGCcaUGGACC------UGGUGG- -5'
19112 5' -57 NC_004684.1 + 53804 0.66 0.730454
Target:  5'- gGCCa--GCCCuGGU-CCUGGAgaaugcCCGCCu -3'
miRNA:   3'- gCGGcaaUGGG-CCAuGGACCU------GGUGG- -5'
19112 5' -57 NC_004684.1 + 62149 0.66 0.730454
Target:  5'- uCGCCG-UGCCCGGccUugCgcaGGGCuCGCg -3'
miRNA:   3'- -GCGGCaAUGGGCC--AugGa--CCUG-GUGg -5'
19112 5' -57 NC_004684.1 + 53621 0.66 0.730454
Target:  5'- aCGCgCG--GCCCGGacacccgcaUGCgCUGGAgCACCc -3'
miRNA:   3'- -GCG-GCaaUGGGCC---------AUG-GACCUgGUGG- -5'
19112 5' -57 NC_004684.1 + 55881 0.66 0.730454
Target:  5'- gGCCGgggcauggaccUGCCCGaugGCCUGuuACCGCCg -3'
miRNA:   3'- gCGGCa----------AUGGGCca-UGGACc-UGGUGG- -5'
19112 5' -57 NC_004684.1 + 863 0.66 0.730454
Target:  5'- cCGCCG-UGCCC---GCC-GGGCCGCg -3'
miRNA:   3'- -GCGGCaAUGGGccaUGGaCCUGGUGg -5'
19112 5' -57 NC_004684.1 + 13730 0.66 0.730454
Target:  5'- gCGCUGUcGgUCGGUGCC---ACCACCu -3'
miRNA:   3'- -GCGGCAaUgGGCCAUGGaccUGGUGG- -5'
19112 5' -57 NC_004684.1 + 26330 0.66 0.720237
Target:  5'- cCGCCGaUUGCCgacgCGGUGCgCUcGGCCAuuCCg -3'
miRNA:   3'- -GCGGC-AAUGG----GCCAUG-GAcCUGGU--GG- -5'
19112 5' -57 NC_004684.1 + 40407 0.66 0.720237
Target:  5'- cCGCCGc-GCUCGcaccgGCCUGGauggcggcguugGCCACCg -3'
miRNA:   3'- -GCGGCaaUGGGCca---UGGACC------------UGGUGG- -5'
19112 5' -57 NC_004684.1 + 17108 0.66 0.720237
Target:  5'- uCGCCGUcggGCCUGGcgcugGCCaGcGACgACCc -3'
miRNA:   3'- -GCGGCAa--UGGGCCa----UGGaC-CUGgUGG- -5'
19112 5' -57 NC_004684.1 + 11455 0.66 0.720237
Target:  5'- gGCCGacgcgcACCaCGGUcACCgaGGACgGCCg -3'
miRNA:   3'- gCGGCaa----UGG-GCCA-UGGa-CCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 30777 0.66 0.720237
Target:  5'- aCGCg--UGCCUGGaacgucucACCggGGGCCACCa -3'
miRNA:   3'- -GCGgcaAUGGGCCa-------UGGa-CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 20017 0.66 0.720237
Target:  5'- -aCCGgagGCCgUGGUGCCUGaaGACCccGCCa -3'
miRNA:   3'- gcGGCaa-UGG-GCCAUGGAC--CUGG--UGG- -5'
19112 5' -57 NC_004684.1 + 52451 0.66 0.720237
Target:  5'- gGCCGccACCgGGaUGCCcgacggcaUGGccGCCACCa -3'
miRNA:   3'- gCGGCaaUGGgCC-AUGG--------ACC--UGGUGG- -5'
19112 5' -57 NC_004684.1 + 15169 0.66 0.720237
Target:  5'- cCGCCGccacgcACCUGGga-CUGGugCugCg -3'
miRNA:   3'- -GCGGCaa----UGGGCCaugGACCugGugG- -5'
19112 5' -57 NC_004684.1 + 60282 0.66 0.720237
Target:  5'- gGCgGUUgcgugGCCCGGU-CCUcGGCgGCCu -3'
miRNA:   3'- gCGgCAA-----UGGGCCAuGGAcCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 38748 0.66 0.720237
Target:  5'- aCGCCaacacGCUCGGUGagcaUUGGACCAgCa -3'
miRNA:   3'- -GCGGcaa--UGGGCCAUg---GACCUGGUgG- -5'
19112 5' -57 NC_004684.1 + 59467 0.66 0.719211
Target:  5'- gGCC-UUGCCUGGguucuccaccggcUGgCUGGcgGCCACCa -3'
miRNA:   3'- gCGGcAAUGGGCC-------------AUgGACC--UGGUGG- -5'
19112 5' -57 NC_004684.1 + 2273 0.66 0.709939
Target:  5'- gGCgGgcaUugCCGccaGCCUGGGCCACg -3'
miRNA:   3'- gCGgCa--AugGGCca-UGGACCUGGUGg -5'
19112 5' -57 NC_004684.1 + 37322 0.66 0.709939
Target:  5'- gGCCaUUGCCU---ACCUGGAaagcCCGCCg -3'
miRNA:   3'- gCGGcAAUGGGccaUGGACCU----GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.