miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 3' -52.8 NC_004684.1 + 21388 0.66 0.891602
Target:  5'- aCGUGCGCACCgUGGC-CGGuGAcUUCa- -3'
miRNA:   3'- -GCACGUGUGG-ACCGuGUU-CUcAAGcg -5'
19119 3' -52.8 NC_004684.1 + 59427 0.66 0.891602
Target:  5'- aCGUGC-CGCCUGGCggccuugcccACcGGuGUgCGCc -3'
miRNA:   3'- -GCACGuGUGGACCG----------UGuUCuCAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 54282 0.66 0.891602
Target:  5'- --cGC-CACCcGGC-CGGGGGUgcgCGCa -3'
miRNA:   3'- gcaCGuGUGGaCCGuGUUCUCAa--GCG- -5'
19119 3' -52.8 NC_004684.1 + 57125 0.66 0.891602
Target:  5'- --cGCugGCagcaCUGGCGCGGcuGGUUCGCc -3'
miRNA:   3'- gcaCGugUG----GACCGUGUUc-UCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 46958 0.66 0.891602
Target:  5'- cCGUGCACagcGCCaGGCugaugcgcCAGGAG-UCGUc -3'
miRNA:   3'- -GCACGUG---UGGaCCGu-------GUUCUCaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 13171 0.66 0.88423
Target:  5'- --cGCGCACCUGGUcCAGGAca--GCc -3'
miRNA:   3'- gcaCGUGUGGACCGuGUUCUcaagCG- -5'
19119 3' -52.8 NC_004684.1 + 60427 0.66 0.88423
Target:  5'- uCG-GUACACCUGGaACGAcucgccGGGUUCGa -3'
miRNA:   3'- -GCaCGUGUGGACCgUGUU------CUCAAGCg -5'
19119 3' -52.8 NC_004684.1 + 17465 0.66 0.88423
Target:  5'- cCGUacGCGCccugcucaucgACCUGGUGCAGGAGcugauuaCGCa -3'
miRNA:   3'- -GCA--CGUG-----------UGGACCGUGUUCUCaa-----GCG- -5'
19119 3' -52.8 NC_004684.1 + 47518 0.66 0.88423
Target:  5'- gCGUGaCGC-CCUGGCGCGuu-GUcUGCa -3'
miRNA:   3'- -GCAC-GUGuGGACCGUGUucuCAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 53222 0.66 0.88423
Target:  5'- gGUGCccaGCACCaccacgUGGCACGGGuaGGUgaucccggCGCg -3'
miRNA:   3'- gCACG---UGUGG------ACCGUGUUC--UCAa-------GCG- -5'
19119 3' -52.8 NC_004684.1 + 6735 0.66 0.88423
Target:  5'- --gGCgACACCUGGCugGcccGGAGccgUCGg -3'
miRNA:   3'- gcaCG-UGUGGACCGugU---UCUCa--AGCg -5'
19119 3' -52.8 NC_004684.1 + 14350 0.66 0.88423
Target:  5'- cCGUGCuggGCACC--GCGCAGGuGUaCGCc -3'
miRNA:   3'- -GCACG---UGUGGacCGUGUUCuCAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 13865 0.66 0.876597
Target:  5'- --cGCGCcgACCUGGCcauuCAGGAGggugUCGa -3'
miRNA:   3'- gcaCGUG--UGGACCGu---GUUCUCa---AGCg -5'
19119 3' -52.8 NC_004684.1 + 21067 0.66 0.876597
Target:  5'- gGUGCugACCgGGCACcuGGGccggucagUGCg -3'
miRNA:   3'- gCACGugUGGaCCGUGuuCUCaa------GCG- -5'
19119 3' -52.8 NC_004684.1 + 58405 0.66 0.868709
Target:  5'- cCGUGCgcaGCACCUGGUuCGuGAuGgccUCGCa -3'
miRNA:   3'- -GCACG---UGUGGACCGuGUuCU-Ca--AGCG- -5'
19119 3' -52.8 NC_004684.1 + 42819 0.66 0.867906
Target:  5'- aCGUGCuCGCCcGGCAUGAGcauggccGGgaCGCu -3'
miRNA:   3'- -GCACGuGUGGaCCGUGUUC-------UCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 60065 0.66 0.863856
Target:  5'- -uUGCACACC-GaGCACGcgucggccauggccGGGUUCGCg -3'
miRNA:   3'- gcACGUGUGGaC-CGUGUu-------------CUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 23239 0.66 0.863039
Target:  5'- cCGUGCcgcaguauugcgaGCGCCUGGUGCucaacgacgcgggcgAGGAGcgCGUg -3'
miRNA:   3'- -GCACG-------------UGUGGACCGUG---------------UUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 41089 0.66 0.860573
Target:  5'- gGUGUACACCUcgaacCACAAGGG--CGCg -3'
miRNA:   3'- gCACGUGUGGAcc---GUGUUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 57304 0.66 0.860573
Target:  5'- gGUGUggcugaGCACCcGGCGCAccacGGGGgugUCGUc -3'
miRNA:   3'- gCACG------UGUGGaCCGUGU----UCUCa--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.