miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 3' -59.1 NC_004684.1 + 27777 0.65 0.551832
Target:  5'- gACCcCCGCCAggAgugggagcgcugcguGGUGGCCCgagcagcuguugagGGCGGCc -3'
miRNA:   3'- -UGGuGGUGGU--U---------------CCACCGGGa-------------CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 65453 0.66 0.543446
Target:  5'- cGCgGCCACCGugcgccGGUaccaGGCCC-GGCAGg -3'
miRNA:   3'- -UGgUGGUGGUu-----CCA----CCGGGaCCGUUg -5'
19121 3' -59.1 NC_004684.1 + 40676 0.66 0.543446
Target:  5'- cGCUcgGCCAgCAAGGUGGCgacgaacuucagCUgGGCGGCg -3'
miRNA:   3'- -UGG--UGGUgGUUCCACCG------------GGaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 47351 0.66 0.543446
Target:  5'- gGCCACCagGCCAcGGUaGGaCCC-GGCggUa -3'
miRNA:   3'- -UGGUGG--UGGUuCCA-CC-GGGaCCGuuG- -5'
19121 3' -59.1 NC_004684.1 + 45861 0.66 0.543446
Target:  5'- cACCACCGCCAGcucgguGGUGGUgUcgaUGGCc-- -3'
miRNA:   3'- -UGGUGGUGGUU------CCACCGgG---ACCGuug -5'
19121 3' -59.1 NC_004684.1 + 26328 0.66 0.539268
Target:  5'- gGCCGCCgauuGCCGAcgcGGUGcGCUCggccauuccgucgGGCAACg -3'
miRNA:   3'- -UGGUGG----UGGUU---CCAC-CGGGa------------CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 34733 0.66 0.533023
Target:  5'- uGCCGCCGCCA----GGCCUUGcCAACc -3'
miRNA:   3'- -UGGUGGUGGUuccaCCGGGACcGUUG- -5'
19121 3' -59.1 NC_004684.1 + 24785 0.66 0.533023
Target:  5'- gGCCGCUggucgauacgGCCAAGGcGGUC--GGCAACa -3'
miRNA:   3'- -UGGUGG----------UGGUUCCaCCGGgaCCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 64348 0.66 0.533023
Target:  5'- cGCCACCACCcGGGccucguugugcGGCCCcucGGUGAUc -3'
miRNA:   3'- -UGGUGGUGGuUCCa----------CCGGGa--CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 49044 0.66 0.533023
Target:  5'- cACCgcGCCGCC--GGUcGGCuCCgggGGCGGCa -3'
miRNA:   3'- -UGG--UGGUGGuuCCA-CCG-GGa--CCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 7560 0.66 0.533023
Target:  5'- gACCGgC-CCcGGGUGGCgCUGGUgcGGCu -3'
miRNA:   3'- -UGGUgGuGGuUCCACCGgGACCG--UUG- -5'
19121 3' -59.1 NC_004684.1 + 41397 0.66 0.531984
Target:  5'- gGCCGCCGCCAggagcgccagcGGGUuGCCUucgcgcaccagcuUGGcCAGCu -3'
miRNA:   3'- -UGGUGGUGGU-----------UCCAcCGGG-------------ACC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 39756 0.66 0.526803
Target:  5'- cACCucgaCACCGAGGUGcGCCaccacgcgugagcugUUGGCAAg -3'
miRNA:   3'- -UGGug--GUGGUUCCAC-CGG---------------GACCGUUg -5'
19121 3' -59.1 NC_004684.1 + 51875 0.66 0.522671
Target:  5'- -gCACCuCCAAGGccucGGCCUcgUGGUGGCa -3'
miRNA:   3'- ugGUGGuGGUUCCa---CCGGG--ACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 19266 0.66 0.522671
Target:  5'- uGCCcuGCCGCCgGAGccGGagccaCCUGGCGACg -3'
miRNA:   3'- -UGG--UGGUGG-UUCcaCCg----GGACCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 29968 0.66 0.522671
Target:  5'- uGCCACCACCGuGGcGGUgUcgaUGGaCAGCg -3'
miRNA:   3'- -UGGUGGUGGUuCCaCCGgG---ACC-GUUG- -5'
19121 3' -59.1 NC_004684.1 + 55350 0.66 0.521641
Target:  5'- aGCCGCCuCCugcuGGUcgagcauGGCCUUGGCcACc -3'
miRNA:   3'- -UGGUGGuGGuu--CCA-------CCGGGACCGuUG- -5'
19121 3' -59.1 NC_004684.1 + 33686 0.66 0.512399
Target:  5'- gGCCACCGCCGcu---GCCgCUGGCGAg -3'
miRNA:   3'- -UGGUGGUGGUuccacCGG-GACCGUUg -5'
19121 3' -59.1 NC_004684.1 + 54210 0.66 0.512399
Target:  5'- gGCCugCucgggGCCGAGGUcGGCCa--GCAGCu -3'
miRNA:   3'- -UGGugG-----UGGUUCCA-CCGGgacCGUUG- -5'
19121 3' -59.1 NC_004684.1 + 12270 0.66 0.512399
Target:  5'- gACCAUCAUCGAGGcccGUgCUGcGCAGCg -3'
miRNA:   3'- -UGGUGGUGGUUCCac-CGgGAC-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.