miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 66742 0.67 0.609859
Target:  5'- cGUGCGCGUCgGUGuccuuggggucGCCGUGcucguCGGCCa -3'
miRNA:   3'- aCGCGCGUAG-CAC-----------CGGCACcu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66266 0.67 0.631235
Target:  5'- aGCGCgGCGUCGUc-CCaGcGGACGGCCa -3'
miRNA:   3'- aCGCG-CGUAGCAccGG-CaCCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66136 0.75 0.236365
Target:  5'- aGCcaGCGCAUCuG-GGCCGgggccGGGCGACCg -3'
miRNA:   3'- aCG--CGCGUAG-CaCCGGCa----CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 66055 0.69 0.515465
Target:  5'- aGCGCGUcggCGUGcgugaucccccaGCCGUGGAaccgcaugucCGGCCa -3'
miRNA:   3'- aCGCGCGua-GCAC------------CGGCACCU----------GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65894 0.69 0.495224
Target:  5'- gGCGCGCAgguUGGCCaccaGGGCcGCCg -3'
miRNA:   3'- aCGCGCGUagcACCGGca--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 65708 0.66 0.695076
Target:  5'- aUGCGCGCcagcucGGCCugGUGGGCGaaaaacGCCa -3'
miRNA:   3'- -ACGCGCGuagca-CCGG--CACCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 65201 0.66 0.705574
Target:  5'- --gGCGUA--GUGGCCGUGcGGC-ACCu -3'
miRNA:   3'- acgCGCGUagCACCGGCAC-CUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 65103 0.67 0.620542
Target:  5'- aGCacCGCGUCGUGGCCcaGGcugGCGGCa -3'
miRNA:   3'- aCGc-GCGUAGCACCGGcaCC---UGUUGg -5'
19122 3' -57.1 NC_004684.1 + 64292 0.71 0.409191
Target:  5'- cGCGCGCAgugCGcccUGGCCGUcguGGugGuugaacACCg -3'
miRNA:   3'- aCGCGCGUa--GC---ACCGGCA---CCugU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 63736 0.69 0.485239
Target:  5'- gUGUGCGCAUCG-GuGCCGaccGGcAUGACCc -3'
miRNA:   3'- -ACGCGCGUAGCaC-CGGCa--CC-UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 63526 0.67 0.620542
Target:  5'- gGCGuCGCAgcUCGcGGgCGUGGcgcuCGGCCu -3'
miRNA:   3'- aCGC-GCGU--AGCaCCgGCACCu---GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 63177 0.67 0.609859
Target:  5'- gGCGCauGCAgUCGUGGCUGgcGGugAucagaACCa -3'
miRNA:   3'- aCGCG--CGU-AGCACCGGCa-CCugU-----UGG- -5'
19122 3' -57.1 NC_004684.1 + 62983 0.72 0.35727
Target:  5'- gGUGCGCA-CGUGGCCgGUGGccgggaacGCGAUg -3'
miRNA:   3'- aCGCGCGUaGCACCGG-CACC--------UGUUGg -5'
19122 3' -57.1 NC_004684.1 + 62461 0.71 0.365596
Target:  5'- aGCGCuccGgGagGUGGCCGUuGGCGACCg -3'
miRNA:   3'- aCGCG---CgUagCACCGGCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 61676 0.76 0.207456
Target:  5'- gUGCGCcugcacgccauugGCGUCG-GuGCCGUGGGCAgGCCg -3'
miRNA:   3'- -ACGCG-------------CGUAGCaC-CGGCACCUGU-UGG- -5'
19122 3' -57.1 NC_004684.1 + 61031 0.67 0.631234
Target:  5'- cGCGCaggcCAUCGccGCCGacaUGGACAACg -3'
miRNA:   3'- aCGCGc---GUAGCacCGGC---ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 60953 0.72 0.341021
Target:  5'- aUGCGUGCuguacaccUCGUGGCUGgUGGcguCGGCCu -3'
miRNA:   3'- -ACGCGCGu-------AGCACCGGC-ACCu--GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 59948 0.67 0.606658
Target:  5'- cGUGCGCGUUGUGcuggcggcgcucguGCCGcacccGGACcuuGCCg -3'
miRNA:   3'- aCGCGCGUAGCAC--------------CGGCa----CCUGu--UGG- -5'
19122 3' -57.1 NC_004684.1 + 59887 0.69 0.495224
Target:  5'- cGCGCGCggCGgccaGCgCGUaGACAACCa -3'
miRNA:   3'- aCGCGCGuaGCac--CG-GCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 58101 0.68 0.577953
Target:  5'- aGCGCGCcgagCaUGGCCG-GGuccgcgaacaacGCGACCg -3'
miRNA:   3'- aCGCGCGua--GcACCGGCaCC------------UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.