miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 19121 0.81 0.087877
Target:  5'- cGUGCGCAUgGUGGCCGacGACAACg -3'
miRNA:   3'- aCGCGCGUAgCACCGGCacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 37712 0.7 0.427514
Target:  5'- cGCGCGCAcgCGcGGUC-UGGuCGGCCg -3'
miRNA:   3'- aCGCGCGUa-GCaCCGGcACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 49834 0.7 0.436855
Target:  5'- gUGCGCGCAccUCGUccaGGCgGUccuGGuagGCGACCa -3'
miRNA:   3'- -ACGCGCGU--AGCA---CCGgCA---CC---UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65201 0.66 0.705574
Target:  5'- --gGCGUA--GUGGCCGUGcGGC-ACCu -3'
miRNA:   3'- acgCGCGUagCACCGGCAC-CUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 20973 0.73 0.295529
Target:  5'- aUGCGCcgggaCAUgcUGGCCGUGGACccGACCa -3'
miRNA:   3'- -ACGCGc----GUAgcACCGGCACCUG--UUGG- -5'
19122 3' -57.1 NC_004684.1 + 30418 0.73 0.317663
Target:  5'- gGUGCGCGUCGgcgaaaccgaacUGGCCGUcGuuGACCa -3'
miRNA:   3'- aCGCGCGUAGC------------ACCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 27796 0.72 0.325313
Target:  5'- aGCGCuGCGUgGUGGCCcgagcagcuGUugaGGGCGGCCu -3'
miRNA:   3'- aCGCG-CGUAgCACCGG---------CA---CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16342 0.72 0.325313
Target:  5'- cGgGCGCAUCGUcaccGGCgGUGGccGCAuccuGCCg -3'
miRNA:   3'- aCgCGCGUAGCA----CCGgCACC--UGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 18016 0.71 0.365595
Target:  5'- gGCG-GCAacaUCGgcaaGGCCaUGGACAGCCu -3'
miRNA:   3'- aCGCgCGU---AGCa---CCGGcACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 21389 0.71 0.382645
Target:  5'- cGUGCGCAcCGUGGCCG-GuGACuuCa -3'
miRNA:   3'- aCGCGCGUaGCACCGGCaC-CUGuuGg -5'
19122 3' -57.1 NC_004684.1 + 8528 0.71 0.374054
Target:  5'- gGCGUGCugugCG-GGCCGgacgaGGugGACCu -3'
miRNA:   3'- aCGCGCGua--GCaCCGGCa----CCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16444 0.71 0.365595
Target:  5'- gGCGCacacCAUCGUGcGCC-UGGACGagGCCg -3'
miRNA:   3'- aCGCGc---GUAGCAC-CGGcACCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 15584 0.81 0.095491
Target:  5'- cGCGCGCggCcUGGCCGUGGACcggGACUa -3'
miRNA:   3'- aCGCGCGuaGcACCGGCACCUG---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 1108 0.71 0.374054
Target:  5'- gGCaccCGCAaCGUGGCCGUccgcugGGACGACg -3'
miRNA:   3'- aCGc--GCGUaGCACCGGCA------CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 66136 0.75 0.236365
Target:  5'- aGCcaGCGCAUCuG-GGCCGgggccGGGCGACCg -3'
miRNA:   3'- aCG--CGCGUAG-CaCCGGCa----CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 46194 0.72 0.346646
Target:  5'- cGCGUGCuuggcccggauaacgUGUGGCCGaguccccucgUGGACAGCUg -3'
miRNA:   3'- aCGCGCGua-------------GCACCGGC----------ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 3541 0.71 0.374054
Target:  5'- cGCGCGCA-CGUGGCacc-GACAGCg -3'
miRNA:   3'- aCGCGCGUaGCACCGgcacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 24886 0.7 0.436855
Target:  5'- aGCGCGCcguugAUCGcguuggccUGGUCGuUGGACAggauGCCg -3'
miRNA:   3'- aCGCGCG-----UAGC--------ACCGGC-ACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 40025 0.74 0.254902
Target:  5'- gGCGCG-AUgGUGGCCuUGGGCAucauGCCg -3'
miRNA:   3'- aCGCGCgUAgCACCGGcACCUGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 55946 0.73 0.318422
Target:  5'- gGUGCGCGUCGgcccggucagcuccgGGUuggcgaaGUGGGCGGCCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------CCGg------CACCUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.