miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 66288 0.66 0.735832
Target:  5'- -cGGccacguugCGGguGC-CCGACGgcaGCGGCGCg -3'
miRNA:   3'- cuCCa-------GCCguCGuGGCUGU---UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 66248 0.72 0.386888
Target:  5'- -cGGUCGGCAcGC-CCGGCAugcCGugGCc -3'
miRNA:   3'- cuCCAGCCGU-CGuGGCUGUu--GCugUG- -5'
19122 5' -56.2 NC_004684.1 + 65819 0.66 0.683031
Target:  5'- cAGGUgaccCGGaGGCACCGGCGGCu-CACa -3'
miRNA:   3'- cUCCA----GCCgUCGUGGCUGUUGcuGUG- -5'
19122 5' -56.2 NC_004684.1 + 65780 0.67 0.650699
Target:  5'- -cGGUgGGCGcGCGCaCGGCGAcCGAUGCc -3'
miRNA:   3'- cuCCAgCCGU-CGUG-GCUGUU-GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 65120 0.66 0.72543
Target:  5'- cAGGcuggCGGCAaugcccgccgccGCGCUGAuCAGCGugGCg -3'
miRNA:   3'- cUCCa---GCCGU------------CGUGGCU-GUUGCugUG- -5'
19122 5' -56.2 NC_004684.1 + 64818 0.68 0.585839
Target:  5'- cGGGUCgGGCA-CACCGGCcuCGGCGa -3'
miRNA:   3'- cUCCAG-CCGUcGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 64639 0.69 0.521256
Target:  5'- --cGUCGGCGucguggcGCACCGcgaugucggcgcGCAGCGGCACc -3'
miRNA:   3'- cucCAGCCGU-------CGUGGC------------UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 63564 0.66 0.735832
Target:  5'- -cGGUCGGCA-CGCCGA--ACG-CGCc -3'
miRNA:   3'- cuCCAGCCGUcGUGGCUguUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 62944 0.66 0.714938
Target:  5'- cAGcGcgCGGCGcGCGCCGACgAugGugGCg -3'
miRNA:   3'- cUC-Ca-GCCGU-CGUGGCUG-UugCugUG- -5'
19122 5' -56.2 NC_004684.1 + 62909 0.67 0.629045
Target:  5'- cGGGGUuaCGGUAGCgGCCaACGACGGCcucGCg -3'
miRNA:   3'- -CUCCA--GCCGUCG-UGGcUGUUGCUG---UG- -5'
19122 5' -56.2 NC_004684.1 + 62601 0.74 0.276716
Target:  5'- -cGGUCGGCcaccGCGCCGAgGcgcuugcugGCGACGCg -3'
miRNA:   3'- cuCCAGCCGu---CGUGGCUgU---------UGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 61563 0.72 0.344424
Target:  5'- cGGGUgCGGCAGCACuCGcGCAGCuggGACGCc -3'
miRNA:   3'- cUCCA-GCCGUCGUG-GC-UGUUG---CUGUG- -5'
19122 5' -56.2 NC_004684.1 + 59872 0.71 0.423252
Target:  5'- cAGGUCGGUccgGGCAgguccaccCCGauGCGGCGGCGCa -3'
miRNA:   3'- cUCCAGCCG---UCGU--------GGC--UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 59676 0.67 0.639875
Target:  5'- cAGGUggcucaCGGcCAGCGCC-ACGGCGACGg -3'
miRNA:   3'- cUCCA------GCC-GUCGUGGcUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 59463 0.66 0.732722
Target:  5'- -cGGUCGGCGGCgauguccaccaccuGCgCGGcCAGCGGCc- -3'
miRNA:   3'- cuCCAGCCGUCG--------------UG-GCU-GUUGCUGug -5'
19122 5' -56.2 NC_004684.1 + 59316 0.72 0.369494
Target:  5'- cGGGGUCGauGGCGCUGGCAAUGAgcCGCa -3'
miRNA:   3'- -CUCCAGCcgUCGUGGCUGUUGCU--GUG- -5'
19122 5' -56.2 NC_004684.1 + 58768 0.68 0.600921
Target:  5'- cGAGGaUCGGCGGUGCCGGugcaccgggcuuguuCGAggccacCGGCGCg -3'
miRNA:   3'- -CUCC-AGCCGUCGUGGCU---------------GUU------GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57825 0.71 0.417667
Target:  5'- cAGGUCGGCcacguguucgcggcGCACCGGCuccaacCGGCGCa -3'
miRNA:   3'- cUCCAGCCGu-------------CGUGGCUGuu----GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57764 0.69 0.522295
Target:  5'- -cGGUCaGGCGGUcuaCGACAcCGACACc -3'
miRNA:   3'- cuCCAG-CCGUCGug-GCUGUuGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57588 0.66 0.693728
Target:  5'- uGAGcGUCGGguGcCACCGGCGcagggccuCGGCGu -3'
miRNA:   3'- -CUC-CAGCCguC-GUGGCUGUu-------GCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.