miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 36104 0.78 0.155916
Target:  5'- cGAGGUaCGGCGGUAgCCGcCGACGAUGCg -3'
miRNA:   3'- -CUCCA-GCCGUCGU-GGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 7430 0.7 0.471459
Target:  5'- cGGGUgCGGCacgAGCGCCGccagcACAACGcGCACg -3'
miRNA:   3'- cUCCA-GCCG---UCGUGGC-----UGUUGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 46329 0.7 0.491509
Target:  5'- cAGGUgccCGGuCAGCACCGGCAccCGuGCACg -3'
miRNA:   3'- cUCCA---GCC-GUCGUGGCUGUu-GC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 63564 0.66 0.735832
Target:  5'- -cGGUCGGCA-CGCCGA--ACG-CGCc -3'
miRNA:   3'- cuCCAGCCGUcGUGGCUguUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 45380 0.75 0.23594
Target:  5'- cAGGUCGGCgAGCACCGGCcccauggccuccugGACcGCGCg -3'
miRNA:   3'- cUCCAGCCG-UCGUGGCUG--------------UUGcUGUG- -5'
19122 5' -56.2 NC_004684.1 + 5932 0.74 0.276716
Target:  5'- uAGGU-GGCacgcgAGCACCGGCGGCGAgACa -3'
miRNA:   3'- cUCCAgCCG-----UCGUGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 53659 0.73 0.305416
Target:  5'- cGAGGU-GGUGGCACCGAC--CGACAg -3'
miRNA:   3'- -CUCCAgCCGUCGUGGCUGuuGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 54456 0.72 0.360158
Target:  5'- gGGGGUgccgaCGGCGGCgaaguugGCCGACGGCG-CACc -3'
miRNA:   3'- -CUCCA-----GCCGUCG-------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 66248 0.72 0.386888
Target:  5'- -cGGUCGGCAcGC-CCGGCAugcCGugGCc -3'
miRNA:   3'- cuCCAGCCGU-CGuGGCUGUu--GCugUG- -5'
19122 5' -56.2 NC_004684.1 + 49055 0.7 0.442186
Target:  5'- -cGGUCGGCuccgggggcGGCACCGGCGuGCGGaACa -3'
miRNA:   3'- cuCCAGCCG---------UCGUGGCUGU-UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 41278 0.71 0.403904
Target:  5'- -cGGUCGGaCAGCGCCGAgGuguuggagaucagGCGAcCGCu -3'
miRNA:   3'- cuCCAGCC-GUCGUGGCUgU-------------UGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 59316 0.72 0.369494
Target:  5'- cGGGGUCGauGGCGCUGGCAAUGAgcCGCa -3'
miRNA:   3'- -CUCCAGCcgUCGUGGCUGUUGCU--GUG- -5'
19122 5' -56.2 NC_004684.1 + 6076 0.77 0.193073
Target:  5'- cGAGGgCGGCGGC-CCGGCGGCGGUGCu -3'
miRNA:   3'- -CUCCaGCCGUCGuGGCUGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 57825 0.71 0.417667
Target:  5'- cAGGUCGGCcacguguucgcggcGCACCGGCuccaacCGGCGCa -3'
miRNA:   3'- cUCCAGCCGu-------------CGUGGCUGuu----GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 24759 0.75 0.225835
Target:  5'- -uGG-CGGCaccAGCACCGGCGGCGGCGg -3'
miRNA:   3'- cuCCaGCCG---UCGUGGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 55284 0.72 0.369494
Target:  5'- cGGGGUCGGgGGUugCGugAugGcCGCc -3'
miRNA:   3'- -CUCCAGCCgUCGugGCugUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 54060 0.71 0.423252
Target:  5'- cAGGUCGGuCGGguCCGGC-ACGuCGCa -3'
miRNA:   3'- cUCCAGCC-GUCguGGCUGuUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 27264 0.7 0.471459
Target:  5'- cGAGGUCGGUgccgaggccgccAGCGCCcGCuACGGcCACg -3'
miRNA:   3'- -CUCCAGCCG------------UCGUGGcUGuUGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 57391 0.75 0.231734
Target:  5'- cAGGUcCGGCAGUuCCGGCAACGGgAUg -3'
miRNA:   3'- cUCCA-GCCGUCGuGGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 18314 0.74 0.276716
Target:  5'- -cGGUUGGCGGCGaCGugGGCGACGa -3'
miRNA:   3'- cuCCAGCCGUCGUgGCugUUGCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.