miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 3' -56.3 NC_004684.1 + 473 0.66 0.734332
Target:  5'- -cGcCGAgGUUGugGCCGCCaagGCCg-- -3'
miRNA:   3'- acCaGCUgUAACugCGGCGG---CGGaac -5'
19126 3' -56.3 NC_004684.1 + 36870 0.66 0.734332
Target:  5'- aGG-CGACAUgcugGugGCCGUgGUCg-- -3'
miRNA:   3'- aCCaGCUGUAa---CugCGGCGgCGGaac -5'
19126 3' -56.3 NC_004684.1 + 25378 0.66 0.734332
Target:  5'- cGGUCaGCGccuACGCCGCCGCg--- -3'
miRNA:   3'- aCCAGcUGUaacUGCGGCGGCGgaac -5'
19126 3' -56.3 NC_004684.1 + 11212 0.66 0.734332
Target:  5'- gGGcgcUCGAUA---GCGCCGCCGUCg-- -3'
miRNA:   3'- aCC---AGCUGUaacUGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 54805 0.66 0.734332
Target:  5'- cGGgccugaaUGACGUUGAUaGCCGCCugcGCCUg- -3'
miRNA:   3'- aCCa------GCUGUAACUG-CGGCGG---CGGAac -5'
19126 3' -56.3 NC_004684.1 + 63999 0.66 0.734332
Target:  5'- uUGG-CGGCGgucuccaGGCGCuUGCCGCgCUUGa -3'
miRNA:   3'- -ACCaGCUGUaa-----CUGCG-GCGGCG-GAAC- -5'
19126 3' -56.3 NC_004684.1 + 47429 0.66 0.723953
Target:  5'- gUGGUgGGgGUUGAuCGCgGCCaGCCa-- -3'
miRNA:   3'- -ACCAgCUgUAACU-GCGgCGG-CGGaac -5'
19126 3' -56.3 NC_004684.1 + 22723 0.66 0.723953
Target:  5'- --aUCGGCAUc-GCGCCGCCGCa--- -3'
miRNA:   3'- accAGCUGUAacUGCGGCGGCGgaac -5'
19126 3' -56.3 NC_004684.1 + 37777 0.66 0.723953
Target:  5'- cGGU--GCAgcUGcACGCCGCUGCCUa- -3'
miRNA:   3'- aCCAgcUGUa-AC-UGCGGCGGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 49340 0.66 0.720822
Target:  5'- aUGGUCGGCGcUGACgggaucaggcccagGCUGUCcaugGCCUUGc -3'
miRNA:   3'- -ACCAGCUGUaACUG--------------CGGCGG----CGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 47645 0.66 0.713487
Target:  5'- gUGGaCGGCcagugcGGCGuuGgCCGCCUUGa -3'
miRNA:   3'- -ACCaGCUGuaa---CUGCggC-GGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 25798 0.66 0.713487
Target:  5'- gUGGcCGACcugcgccagGAaaUGCCGCCGCCg-- -3'
miRNA:   3'- -ACCaGCUGuaa------CU--GCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 8852 0.66 0.713487
Target:  5'- aGGcCGcucGCAUcuccaACGCCGCCGCCa-- -3'
miRNA:   3'- aCCaGC---UGUAac---UGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 12748 0.66 0.712436
Target:  5'- aGGUCGACGcccucUUGGC-CCGCgcggcugCGCCUg- -3'
miRNA:   3'- aCCAGCUGU-----AACUGcGGCG-------GCGGAac -5'
19126 3' -56.3 NC_004684.1 + 22610 0.66 0.702943
Target:  5'- cGGUgaggccguuaCGGCGcuguggGAgGCCGCCGCCa-- -3'
miRNA:   3'- aCCA----------GCUGUaa----CUgCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 32909 0.66 0.702943
Target:  5'- cGGUUGACcucggcGACGCUGCacaGCCaUGa -3'
miRNA:   3'- aCCAGCUGuaa---CUGCGGCGg--CGGaAC- -5'
19126 3' -56.3 NC_004684.1 + 55139 0.66 0.702943
Target:  5'- aUGGUCauguACGUgaccgGAuCGCCGCCGUCg-- -3'
miRNA:   3'- -ACCAGc---UGUAa----CU-GCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 41976 0.66 0.702943
Target:  5'- aGGUCGGaggcacccCAUUGGuacugGCCGCCGCUg-- -3'
miRNA:   3'- aCCAGCU--------GUAACUg----CGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 42447 0.66 0.692333
Target:  5'- gGGUCGGCAccgaggaacuucUcGGgGUCGCCGCCc-- -3'
miRNA:   3'- aCCAGCUGU------------AaCUgCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 35815 0.66 0.692333
Target:  5'- cGGUgGuCAUUcacGACGCCGCCaGCUUc- -3'
miRNA:   3'- aCCAgCuGUAA---CUGCGGCGG-CGGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.