miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 5' -60.8 NC_004684.1 + 56701 0.66 0.518131
Target:  5'- aGCUGGGCcCGggggugaagcuggCGGUGcugaUGCCGcGCCa -3'
miRNA:   3'- aCGACCCGcGCaa-----------GCCGC----ACGGC-UGG- -5'
19126 5' -60.8 NC_004684.1 + 22782 0.66 0.518131
Target:  5'- aUGUUcgaGGGCGUGgcUGGCGacuucaacacgcugGUCGACCg -3'
miRNA:   3'- -ACGA---CCCGCGCaaGCCGCa-------------CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 41774 0.66 0.514149
Target:  5'- cGUUGGGCaGCGUcgCGcGCauGUGcCCGGCg -3'
miRNA:   3'- aCGACCCG-CGCAa-GC-CG--CAC-GGCUGg -5'
19126 5' -60.8 NC_004684.1 + 7837 0.66 0.514149
Target:  5'- cGCUGGugcgacaacgGCGCGcgCuGGCGgUGCagGACCu -3'
miRNA:   3'- aCGACC----------CGCGCaaG-CCGC-ACGg-CUGG- -5'
19126 5' -60.8 NC_004684.1 + 8175 0.66 0.514149
Target:  5'- cGCcggGGGCGCGcugggccaGGCGcaGCUGAUCa -3'
miRNA:   3'- aCGa--CCCGCGCaag-----CCGCa-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 55988 0.66 0.514149
Target:  5'- gGCcGGGUagGUGgUCGGCGUGaacgaGGCCa -3'
miRNA:   3'- aCGaCCCG--CGCaAGCCGCACgg---CUGG- -5'
19126 5' -60.8 NC_004684.1 + 23280 0.66 0.504252
Target:  5'- gGCgaGGaGCGCGUggUCGGCacGCUgGACCg -3'
miRNA:   3'- aCGa-CC-CGCGCA--AGCCGcaCGG-CUGG- -5'
19126 5' -60.8 NC_004684.1 + 45631 0.66 0.504252
Target:  5'- uUGCcgGGGaacagGCGcagCGcGCG-GCCGACCa -3'
miRNA:   3'- -ACGa-CCCg----CGCaa-GC-CGCaCGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 26578 0.66 0.504252
Target:  5'- -cCUGGcGCGCGg-CGGUGUGCgCGgguucGCCa -3'
miRNA:   3'- acGACC-CGCGCaaGCCGCACG-GC-----UGG- -5'
19126 5' -60.8 NC_004684.1 + 1080 0.66 0.504252
Target:  5'- cGCUGGaCGUGaUCGGUGaccagGCCGcgACCc -3'
miRNA:   3'- aCGACCcGCGCaAGCCGCa----CGGC--UGG- -5'
19126 5' -60.8 NC_004684.1 + 59067 0.66 0.494438
Target:  5'- cGCUGGcGCGCaccucuucCGGCGUcagcGCCaACCa -3'
miRNA:   3'- aCGACC-CGCGcaa-----GCCGCA----CGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 66505 0.66 0.494438
Target:  5'- aUGUUGcgcGGCGCGg--GGaucaCGUGCUGGCCg -3'
miRNA:   3'- -ACGAC---CCGCGCaagCC----GCACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 51629 0.66 0.494438
Target:  5'- cGCUcGGCGCaccuUUCGGUGUaCgCGGCCa -3'
miRNA:   3'- aCGAcCCGCGc---AAGCCGCAcG-GCUGG- -5'
19126 5' -60.8 NC_004684.1 + 37099 0.66 0.484711
Target:  5'- aUGCUGcGGagaaCGUUgaggagggcUGGCGUGCCG-CCa -3'
miRNA:   3'- -ACGAC-CCgc--GCAA---------GCCGCACGGCuGG- -5'
19126 5' -60.8 NC_004684.1 + 66679 0.66 0.484711
Target:  5'- aGUUGGaGCGCcaggccGUccacCGGCG-GCUGACCu -3'
miRNA:   3'- aCGACC-CGCG------CAa---GCCGCaCGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 25715 0.66 0.484711
Target:  5'- cGCUGGGUGUugccgaggUCGGC---CCGGCCu -3'
miRNA:   3'- aCGACCCGCGca------AGCCGcacGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 5887 0.66 0.484711
Target:  5'- cUGCUGGcGCGCa-UCGaGCGccGCCG-CCu -3'
miRNA:   3'- -ACGACC-CGCGcaAGC-CGCa-CGGCuGG- -5'
19126 5' -60.8 NC_004684.1 + 46303 0.66 0.475078
Target:  5'- cGUUGcGGCGC--UUGGCGUGC--GCCa -3'
miRNA:   3'- aCGAC-CCGCGcaAGCCGCACGgcUGG- -5'
19126 5' -60.8 NC_004684.1 + 30093 0.66 0.475078
Target:  5'- aUGCUGGaCGCGcucUUGGCGaUGUCcACCa -3'
miRNA:   3'- -ACGACCcGCGCa--AGCCGC-ACGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 50998 0.66 0.475078
Target:  5'- cGuCUGGGUGCGgauguagUCGaUGUGCCGGgUg -3'
miRNA:   3'- aC-GACCCGCGCa------AGCcGCACGGCUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.