miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 5' -55.2 NC_004684.1 + 56693 0.66 0.780118
Target:  5'- gGCGCagaaGCUgggcccgggggugaaGCuGGCggUGCUGAUGCCg -3'
miRNA:   3'- aCGCG----UGA---------------UG-CUGuuGCGACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 15631 0.66 0.776151
Target:  5'- aGCGCGagcACGACaAGCGCcUGgagcACGCCg -3'
miRNA:   3'- aCGCGUga-UGCUG-UUGCG-AC----UGCGGa -5'
19143 5' -55.2 NC_004684.1 + 35620 0.66 0.776151
Target:  5'- cGCgGCACUACuuuCcGCGCgugGugGCCg -3'
miRNA:   3'- aCG-CGUGAUGcu-GuUGCGa--CugCGGa -5'
19143 5' -55.2 NC_004684.1 + 33095 0.66 0.776151
Target:  5'- cGUgGCGCUGcCGACGcagGCGCUcGCGCUg -3'
miRNA:   3'- aCG-CGUGAU-GCUGU---UGCGAcUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 8996 0.66 0.776151
Target:  5'- --gGUGCUGCGcACggUGCUGAUGCg- -3'
miRNA:   3'- acgCGUGAUGC-UGuuGCGACUGCGga -5'
19143 5' -55.2 NC_004684.1 + 9673 0.66 0.776151
Target:  5'- aGCGCGCggugUACGGCGA-GCUGACcaaaaCCa -3'
miRNA:   3'- aCGCGUG----AUGCUGUUgCGACUGc----GGa -5'
19143 5' -55.2 NC_004684.1 + 53174 0.66 0.776151
Target:  5'- aUGCGUucGCcgAUGGCAcCGUUGACGCa- -3'
miRNA:   3'- -ACGCG--UGa-UGCUGUuGCGACUGCGga -5'
19143 5' -55.2 NC_004684.1 + 47016 0.66 0.776151
Target:  5'- cGCGUACUGCucgAACGUcgggGugGCCUg -3'
miRNA:   3'- aCGCGUGAUGcugUUGCGa---CugCGGA- -5'
19143 5' -55.2 NC_004684.1 + 20689 0.66 0.776151
Target:  5'- gGCGCGCU-CGcACAGgGC--GCGCCa -3'
miRNA:   3'- aCGCGUGAuGC-UGUUgCGacUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 27616 0.66 0.776151
Target:  5'- aGCGCAU--CGAgAACgGCcagGACGCCa -3'
miRNA:   3'- aCGCGUGauGCUgUUG-CGa--CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 54111 0.66 0.775155
Target:  5'- cGCGCACcagccaccgGCGGCcaccagcGCGCUGGCggucacgGCCUg -3'
miRNA:   3'- aCGCGUGa--------UGCUGu------UGCGACUG-------CGGA- -5'
19143 5' -55.2 NC_004684.1 + 35952 0.66 0.775155
Target:  5'- gGCgGCuguuCUACGACAGCGacuccacgcaggcCUGGCGCa- -3'
miRNA:   3'- aCG-CGu---GAUGCUGUUGC-------------GACUGCGga -5'
19143 5' -55.2 NC_004684.1 + 53545 0.66 0.770155
Target:  5'- gGCGCggaugaccucggagaACcACGACGGCGCa-ACGCCUu -3'
miRNA:   3'- aCGCG---------------UGaUGCUGUUGCGacUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 30211 0.66 0.766129
Target:  5'- cGCGCGCgucgAUGcuCGGCGCgacGugGCCc -3'
miRNA:   3'- aCGCGUGa---UGCu-GUUGCGa--CugCGGa -5'
19143 5' -55.2 NC_004684.1 + 37220 0.66 0.766129
Target:  5'- aGCuCGCcgcCGACGGCGUUGAuCGCCc -3'
miRNA:   3'- aCGcGUGau-GCUGUUGCGACU-GCGGa -5'
19143 5' -55.2 NC_004684.1 + 15557 0.66 0.766129
Target:  5'- cGCGCACUGgGugaugcuccagcGCAGCGCgcGCgGCCUg -3'
miRNA:   3'- aCGCGUGAUgC------------UGUUGCGacUG-CGGA- -5'
19143 5' -55.2 NC_004684.1 + 55934 0.66 0.766129
Target:  5'- gGUGgACcgggGCGAggcCGACGCcGACGCCg -3'
miRNA:   3'- aCGCgUGa---UGCU---GUUGCGaCUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 41779 0.66 0.766129
Target:  5'- gGCGUACggacGCGGCcaggUGCcGACGCCg -3'
miRNA:   3'- aCGCGUGa---UGCUGuu--GCGaCUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 30298 0.66 0.766129
Target:  5'- gGCGCuaucgGCUACGACGACGaggucggGGCaccgGCCa -3'
miRNA:   3'- aCGCG-----UGAUGCUGUUGCga-----CUG----CGGa -5'
19143 5' -55.2 NC_004684.1 + 62631 0.66 0.766129
Target:  5'- cGUgGCGCUugaucaggucGCGGCAcuuGCgGCUGugGCCg -3'
miRNA:   3'- aCG-CGUGA----------UGCUGU---UG-CGACugCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.