miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 1597 0.65 0.881192
Target:  5'- cGCCAGCGUgcaggagcagcaGUUccGGCaCCUGcACCGGCg -3'
miRNA:   3'- -CGGUCGUAa-----------CAA--CUG-GGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 63924 0.66 0.875046
Target:  5'- -aCGGCGUUGUacGCgCCGAACUGGg -3'
miRNA:   3'- cgGUCGUAACAacUGgGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 61702 0.66 0.867137
Target:  5'- uGCCgugGGCAggccgGGCCCCGGccaccuCCGACc -3'
miRNA:   3'- -CGG---UCGUaacaaCUGGGGCUu-----GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 15707 0.66 0.867137
Target:  5'- aCCGGCAUcGUgcuCCCgGAgacACCGACc -3'
miRNA:   3'- cGGUCGUAaCAacuGGGgCU---UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9522 0.66 0.858983
Target:  5'- cGCCAGCucucc-GACCgCGAGCUGGu -3'
miRNA:   3'- -CGGUCGuaacaaCUGGgGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 18433 0.66 0.858983
Target:  5'- aCCGGCGgccgacgUGGCuCCCGAGCagGACg -3'
miRNA:   3'- cGGUCGUaaca---ACUG-GGGCUUGg-CUG- -5'
19151 3' -53.2 NC_004684.1 + 34799 0.66 0.858983
Target:  5'- cGUCuGCAUUGcgGAgaaCCUGAccACCGACg -3'
miRNA:   3'- -CGGuCGUAACaaCUg--GGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 66700 0.66 0.858983
Target:  5'- aCCGGCGgc--UGACCUCGgGGCCGAg -3'
miRNA:   3'- cGGUCGUaacaACUGGGGC-UUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 41328 0.66 0.858983
Target:  5'- cGCCGagg-UGUUGGCCUCGAACUcGCc -3'
miRNA:   3'- -CGGUcguaACAACUGGGGCUUGGcUG- -5'
19151 3' -53.2 NC_004684.1 + 25075 0.66 0.858983
Target:  5'- gGCCGG-GUUGgUGGCCUCGAuaacCCGAa -3'
miRNA:   3'- -CGGUCgUAACaACUGGGGCUu---GGCUg -5'
19151 3' -53.2 NC_004684.1 + 8585 0.66 0.854817
Target:  5'- uGCCgAGCAUgaacgcgccggUGGCCUCGAacaagcccggugcACCGGCa -3'
miRNA:   3'- -CGG-UCGUAaca--------ACUGGGGCU-------------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 64398 0.66 0.850592
Target:  5'- uGCaCGGCGcgGUgaUGGCCUCGAACCcguuGGCc -3'
miRNA:   3'- -CG-GUCGUaaCA--ACUGGGGCUUGG----CUG- -5'
19151 3' -53.2 NC_004684.1 + 64668 0.66 0.850592
Target:  5'- gGCCGuGCggUGUggcgcacuUGcCCCCGGcACCGGCc -3'
miRNA:   3'- -CGGU-CGuaACA--------ACuGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 38246 0.66 0.850592
Target:  5'- gGCCAGCGca--UGuCCCCGgAGCUGAUc -3'
miRNA:   3'- -CGGUCGUaacaACuGGGGC-UUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 22941 0.66 0.850592
Target:  5'- gGCCAGCGUgcucagcugGUcGACUacgccaCCGGGCCgGACg -3'
miRNA:   3'- -CGGUCGUAa--------CAaCUGG------GGCUUGG-CUG- -5'
19151 3' -53.2 NC_004684.1 + 67004 0.66 0.841971
Target:  5'- cGCCacGGCGg---UGAUCCUG-ACCGGCa -3'
miRNA:   3'- -CGG--UCGUaacaACUGGGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 2579 0.66 0.841971
Target:  5'- gGCCGGUGUgcccGACCcgaCCGAguacGCCGACg -3'
miRNA:   3'- -CGGUCGUAacaaCUGG---GGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 45375 0.67 0.832233
Target:  5'- gGCCAGCAggucgaUGcUGACCagcuccaCCGGACCcuGGCg -3'
miRNA:   3'- -CGGUCGUa-----ACaACUGG-------GGCUUGG--CUG- -5'
19151 3' -53.2 NC_004684.1 + 38776 0.67 0.830435
Target:  5'- cGUCGGCAccuggaacagguacUUGcUGAuuuCCCCG-ACCGGCa -3'
miRNA:   3'- -CGGUCGU--------------AACaACU---GGGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 26315 0.67 0.829532
Target:  5'- gGCCAGgccgccgGGCCgCCGAuuGCCGACg -3'
miRNA:   3'- -CGGUCguaacaaCUGG-GGCU--UGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.