miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19158 3' -55.2 NC_004684.1 + 3732 0.66 0.814348
Target:  5'- cACCGACGAAAC--CCCCgaagaCGUGCaguuCGAc -3'
miRNA:   3'- -UGGCUGCUUUGuuGGGG-----GCAUGg---GCU- -5'
19158 3' -55.2 NC_004684.1 + 23757 0.66 0.814348
Target:  5'- uCCGACGAAcucaccgcgcuCGGCCacaCCGUGgCCGGg -3'
miRNA:   3'- uGGCUGCUUu----------GUUGGg--GGCAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 18467 0.66 0.814348
Target:  5'- -gCGACGAGGCcgGGCCUgCGgACCCGc -3'
miRNA:   3'- ugGCUGCUUUG--UUGGGgGCaUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 10957 0.66 0.814348
Target:  5'- gAUCGugGugGCGGCCUCCuugacCCCGAg -3'
miRNA:   3'- -UGGCugCuuUGUUGGGGGcau--GGGCU- -5'
19158 3' -55.2 NC_004684.1 + 42003 0.66 0.814348
Target:  5'- cGCUGGCGA--CAACCuCCUGgauCCCGu -3'
miRNA:   3'- -UGGCUGCUuuGUUGG-GGGCau-GGGCu -5'
19158 3' -55.2 NC_004684.1 + 34674 0.66 0.814348
Target:  5'- gGCCaACGcGAGCAACCCCCagACgCGGa -3'
miRNA:   3'- -UGGcUGC-UUUGUUGGGGGcaUGgGCU- -5'
19158 3' -55.2 NC_004684.1 + 59233 0.66 0.813434
Target:  5'- cCCGGCGAucugguuGACGAUCUgCUGcACCCGAg -3'
miRNA:   3'- uGGCUGCU-------UUGUUGGG-GGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 51139 0.66 0.805132
Target:  5'- uGCCGACGAAucugcgccgcCGACUCCUcgguGUGgCCGAu -3'
miRNA:   3'- -UGGCUGCUUu---------GUUGGGGG----CAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 2404 0.66 0.805132
Target:  5'- cGCUGGCGAGccGCAGaCCCgCGUcgcggucaucgACCUGAa -3'
miRNA:   3'- -UGGCUGCUU--UGUU-GGGgGCA-----------UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 40938 0.66 0.805132
Target:  5'- -gCGGCcAGGCGugCCgCCGUACaCCGGg -3'
miRNA:   3'- ugGCUGcUUUGUugGG-GGCAUG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 43391 0.66 0.803268
Target:  5'- cCCGACGGcccggagAACGggucgccGCCgCCGaACCCGAg -3'
miRNA:   3'- uGGCUGCU-------UUGU-------UGGgGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 6724 0.66 0.795744
Target:  5'- aGCCGAaGAAagGCGACaCCUGgcugGCCCGGa -3'
miRNA:   3'- -UGGCUgCUU--UGUUGgGGGCa---UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 18432 0.66 0.795744
Target:  5'- cACCGGCGGccGACGugGCUCCCGaGCaggaCGAc -3'
miRNA:   3'- -UGGCUGCU--UUGU--UGGGGGCaUGg---GCU- -5'
19158 3' -55.2 NC_004684.1 + 9982 0.66 0.786193
Target:  5'- uUCGACGcgcuCGGCaUCCCGUugCCGGa -3'
miRNA:   3'- uGGCUGCuuu-GUUG-GGGGCAugGGCU- -5'
19158 3' -55.2 NC_004684.1 + 19133 0.66 0.786193
Target:  5'- gGCCGACGAcAACGGacgccUCCCCGgcaagGCCauCGAg -3'
miRNA:   3'- -UGGCUGCU-UUGUU-----GGGGGCa----UGG--GCU- -5'
19158 3' -55.2 NC_004684.1 + 31842 0.66 0.786193
Target:  5'- gACCuuGACGcucaucGCGGCuCCUCGUGCCCGc -3'
miRNA:   3'- -UGG--CUGCuu----UGUUG-GGGGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 1348 0.66 0.786193
Target:  5'- cGCCGACGcgcucaAGCUCCCGUucuuCUCGGu -3'
miRNA:   3'- -UGGCUGCuuug--UUGGGGGCAu---GGGCU- -5'
19158 3' -55.2 NC_004684.1 + 65438 0.66 0.776489
Target:  5'- cGCUGGCGugcggcgcGCGGCCaCCGUGCgCCGGu -3'
miRNA:   3'- -UGGCUGCuu------UGUUGGgGGCAUG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 311 0.67 0.766643
Target:  5'- gGCCGcCGAGGcCAACgCCCGcACCgGGu -3'
miRNA:   3'- -UGGCuGCUUU-GUUGgGGGCaUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 12785 0.67 0.766643
Target:  5'- gGCCaACGAgGACAacggcACCCCCGccgacgacgcGCCCGAg -3'
miRNA:   3'- -UGGcUGCU-UUGU-----UGGGGGCa---------UGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.